Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0482
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               29   2.4  
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)            28   5.6  
SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   7.4  

>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = -2

Query: 588 NSHYHSYVMFCYHHYDVNPLHQIFLMQICVILNLRN*SHFHFRFQSLIRWSHFYLLFHLW 409
           + H+H      YHH+  +  H   ++ I  I  +    H+H   +  I   H Y  +H  
Sbjct: 13  HQHHHPPSSPSYHHHRHHQHHPSIIIIIITISTITLVLHYHHHHRQHITVHHHYHHYHHH 72

Query: 408 NH 403
           +H
Sbjct: 73  HH 74


>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 564 SHNYDNANSSKSDHHTDKNSSGED 635
           S+N D  NS+++DH+ D NS   D
Sbjct: 313 SNNNDFNNSNRNDHNVDNNSHNND 336


>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
          Length = 356

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 630 HQNYFYQYDGQILMNSHYHSYVMFCYHH 547
           H +Y+Y YD     + HYH    + YH+
Sbjct: 307 HYHYYYYYDYHYHYDYHYHYDYHYDYHY 334


>SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = -2

Query: 609 YDGQILMNSHYHSYVMFCYHHYDVNPLHQIFLMQICVILNLRN*SHFHFRFQSLIRWSHF 430
           Y  Q+ ++ HY + V    H+++   + +    Q+ +  +  N  +    +     W+  
Sbjct: 137 YSNQVYIDKHYSNQVYIDKHYWNQVYIVKHHSNQVYIDKHYSNQVYIDKHY-----WNQV 191

Query: 429 YLLFHLWNHFQI--HLWN 382
           Y+  H WN   I  H WN
Sbjct: 192 YIDKHYWNQVYIDKHYWN 209


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 588  NSHYHSYVMFCYHHYDVNPLHQIFLMQICVILNLRN*SHFHFR 460
            N  +H+ + + +HHY  +P H   L        L     FH+R
Sbjct: 989  NHSFHTTLNYHHHHYHYHPFHYRLLRHHSFHYRLLRHHPFHYR 1031


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,981
Number of Sequences: 59808
Number of extensions: 239895
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)