Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0481
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    97   2e-21
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    28   1.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.4  

>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 17/174 (9%)
 Frame = +2

Query: 185 VQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEFEKV------KLDXXXXXXXXXXXXX 346
           V YC  C++P+EYCE+     KCK+WL+ + P  ++K+        D             
Sbjct: 12  VLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHPDVYDKLYGEQDLSKDLENTLNVSGTKDS 71

Query: 347 XXXXXXXMLKSKKK----EDVPKL---VQVFRAPRGKKKSVTVVSGLSTFDIDLKVAAKF 505
                   L  ++K    E+  ++   V +    R K+K VT V GL  F I+ K AAK 
Sbjct: 72  NAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQGLDAFGIETKKAAKM 131

Query: 506 FGTKFACGSSVTGD----DEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDQK 655
              KFA G+SVT      DEIV+QGD+  D+FD I EK+ E+ ED+I+ + D K
Sbjct: 132 LANKFATGASVTKTADKKDEIVVQGDLNYDIFDFILEKFKEVPEDNIKIVEDTK 185


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 486 RSISKVLNPDTTVTDFFLPRGARNTCTNLGTSSFFLDFN 370
           RS  +V+NP+ +VTD   P G  N     G SSF    N
Sbjct: 223 RSRKRVVNPECSVTD--TPYGKLNNVIGEGASSFIRVIN 259


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 625  FINFWPLFRYDIKKIIFNITLN 560
            F+NF PLFR    K+I+N+ LN
Sbjct: 965  FVNFVPLFR----KVIWNLLLN 982


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,715
Number of Sequences: 5004
Number of extensions: 39573
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)