Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0481
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 70 2e-12
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 36 0.022
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629... 31 1.1
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 31 1.1
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 29 3.3
11_06_0577 - 25158833-25162864 29 4.4
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 4.4
11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959... 28 5.8
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Frame = +2
Query: 383 KKEDVPKLVQVFRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSV----TGDD 550
KK+D ++V + + R K+K VTVV GL F + L A+K G KFA G+SV T +
Sbjct: 101 KKKDKQEVV-IEKIVRNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKE 159
Query: 551 EIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDQKKV 661
+I +QGD+ D+ + I + WP++ E +I + D +KV
Sbjct: 160 QIDVQGDISYDIVEFITDTWPDVPESAIFFIEDGRKV 196
Score = 56.8 bits (131), Expect = 1e-08
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 176 PIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLP 280
P++V YCG C +P EYCE+ P++++CK WL N P
Sbjct: 8 PVRVLYCGVCGLPAEYCEFGPDFERCKPWLRANAP 42
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +2
Query: 401 KLVQVFRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVT------GDDEIVI 562
+ +Q+ R K +T +SGL F +D A KFAC ++ G E+++
Sbjct: 506 RTIQIMTERRQGNKKMTRLSGLECFLMDPDSLASELQKKFACSTTTAELPGKKGQHEVLV 565
Query: 563 QGDVKDDL 586
QG V DDL
Sbjct: 566 QGGVIDDL 573
>11_06_0180 +
20962420-20962528,20962618-20962699,20962831-20962948,
20963024-20963062,20963181-20963343,20963706-20963921,
20964039-20964116,20964244-20964500,20964544-20964575,
20964815-20965197,20965262-20965831,20966250-20966343,
20966365-20966541,20966761-20966963,20968244-20968301,
20969126-20969381,20969553-20969789
Length = 1023
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 221 YCEYYPEYDKCKQWLEKNLPTEFEKVKL 304
+ E PEY++ K+WLE++LP K K+
Sbjct: 740 WLEASPEYEQEKRWLEQDLPVSCGKFKI 767
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 221 YCEYYPEYDKCKQWLEKNLPTEFEKVKL 304
+ E PEY++ K+WLE++LP K K+
Sbjct: 839 WLEASPEYEQEKRWLEQDLPVSCGKFKI 866
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 587 FDIIPEKWPEIDEDSIEDLGDQ 652
FD+IPEK EID +S+E + D+
Sbjct: 178 FDLIPEKGWEIDLNSLESIADK 199
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 545 DDEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDQKK 658
DD+ +Q D+ + + E W EI++ + +D +Q K
Sbjct: 320 DDDDNLQSQASDEKWQVFDEMWEEIEKRNFDDRIEQLK 357
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 491 VAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDIIPEKWPEIDEDSIE 637
V A+ G K CG DD +V+ GD DD+ + EK E D S E
Sbjct: 65 VMAQQKGGKPDCGGEEDDDDCVVLDGD-PDDVVAVAGEKGSEGDGSSDE 112
>11_06_0060 -
19695338-19695477,19695641-19695734,19695818-19695973,
19696109-19696168,19696384-19696602,19696607-19697036,
19698428-19698747
Length = 472
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 587 FDIIPEKWPEIDEDSIEDLGDQKKV 661
FD++PE E+D D +++L D+ V
Sbjct: 174 FDLLPESGWEVDLDGVQELADKNTV 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,347
Number of Sequences: 37544
Number of extensions: 228660
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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