Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0481
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_25796| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_38789| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=3.8)            29   3.4  
SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.4  
SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           28   7.8  

>SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +2

Query: 476 DIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDIIPEKWPE 616
           +IDLK A+K F  +F+CG+SVTGDD+I IQGDV DDL+D IP+KWPE
Sbjct: 33  EIDLKKASKAFANRFSCGASVTGDDKIEIQGDVTDDLWDFIPDKWPE 79


>SB_25796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 545 DDEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGD 649
           D ++V+  DV DD  D++ +   ++D+D I+D  D
Sbjct: 20  DVDVVVDDDVDDDDDDVVDDDNDDVDDDDIDDDDD 54


>SB_38789| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=3.8)
          Length = 155

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 527 GSSVTGDDEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGD 649
           GS   GDD +V+   V DDLF ++     + D  S+ED  D
Sbjct: 116 GSRRCGDDALVV---VVDDLFGVVHAAVTDFDGVSVEDFTD 153


>SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 527 GSSVTGDDEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGD 649
           GS   GDD +V+   V DDLF ++     + D  S+ED  D
Sbjct: 176 GSRRCGDDALVV---VVDDLFGVVHAAVTDFDGVSVEDFTD 213


>SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 527 GSSVTGDDEIVIQGDVK--DDLFDIIPEKWPEIDEDSIEDLGD 649
           G S   DD+  I GD +  DDL  + PE   +I++D  + L D
Sbjct: 376 GKSPKDDDQERIAGDTEPVDDLSQLSPENRDDIEQDRDDVLSD 418


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 537  TEDPQANFVPKNFAATFRSISKVLNPDTTVTDFFLPRGARNTCTNL 400
            T DP  + +    A+   S    +NP T V  +++  G+R +C ++
Sbjct: 1023 TSDPSGSLIYNTDASHSASYLPGVNPSTGVVWYWMREGSRKSCNDI 1068


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,557
Number of Sequences: 59808
Number of extensions: 276548
Number of successful extensions: 937
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)