Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0481
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11900.1 68418.m01392 eukaryotic translation initiation facto... 96 2e-20
At1g71350.1 68414.m08235 eukaryotic translation initiation facto... 37 0.010
At5g18750.1 68418.m02226 DNAJ heat shock N-terminal domain-conta... 30 1.6
At5g18730.1 68418.m02222 hypothetical protein predicted proteins... 29 3.6
At5g36160.1 68418.m04357 aminotransferase-related similar to nic... 28 4.8
At2g20610.2 68415.m02412 aminotransferase, putative similar to n... 28 4.8
At2g20610.1 68415.m02411 aminotransferase, putative similar to n... 28 4.8
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet... 27 8.4
At5g09930.1 68418.m01148 ABC transporter family protein 27 8.4
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i... 27 8.4
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i... 27 8.4
>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
SUI1 family protein similar to SP|O43583
Density-regulated protein (DRP1 protein) (Smooth muscle
cell associated protein-3) {Homo sapiens}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 198
Score = 96.3 bits (229), Expect = 2e-20
Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 27/189 (14%)
Frame = +2
Query: 176 PIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEF--------EKVK---LDXXXXX 322
P+KV YCG CS+P EYCE+ P++ +CK WL +N P + EK D
Sbjct: 7 PVKVLYCGVCSLPAEYCEFGPDFARCKPWLVENAPDLYPDLLKEANEKAADNVSDKLQSV 66
Query: 323 XXXXXXXXXXXXXXXMLKSKKKEDVPKL------------VQVFRAPRGKKKSVTVVSGL 466
+ KKE+V +L V + + R K+K +T+V GL
Sbjct: 67 GISSGGADGAPSSAQTGGTSKKEEVKRLPGGKVKKKDRQEVIIEKVVRNKRKCITIVKGL 126
Query: 467 STFDIDLKVAAKFFGTKFACGSSV----TGDDEIVIQGDVKDDLFDIIPEKWPEIDEDSI 634
F I L A+K G KFA G+SV T ++I +QGD+ D+ + I + WP++ E SI
Sbjct: 127 ELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEFITDTWPDVPERSI 186
Query: 635 EDLGDQKKV 661
+ D KKV
Sbjct: 187 FFIEDGKKV 195
>At1g71350.1 68414.m08235 eukaryotic translation initiation factor
SUI1 family protein weak similarity to SP|P41214 Ligatin
(Hepatocellular carcinoma-associated antigen 56) {Homo
sapiens}; contains Pfam profile PF01253: Translation
initiation factor SUI1
Length = 597
Score = 37.1 bits (82), Expect = 0.010
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 401 KLVQVFRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSV---TGDD--EIVIQ 565
K VQ+ R K VT V+G+ TF ID KFAC +SV G E++IQ
Sbjct: 508 KPVQIMTERRQGNKKVTKVTGMETFLIDPDSFGSELQKKFACSTSVGELPGKKGYEVLIQ 567
Query: 566 GDVKDDL 586
G V D+L
Sbjct: 568 GGVIDNL 574
>At5g18750.1 68418.m02226 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 884
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 209 MPIEYCEYYPEYDKCKQWLEKNLPTEFEKVKL 304
+ I++ E P+ +K W+ KNLP K KL
Sbjct: 448 LKIQWLEAEPDDEKANLWVRKNLPISIGKFKL 479
>At5g18730.1 68418.m02222 hypothetical protein predicted proteins -
Arabidopsis thaliana
Length = 644
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 206 SMPIEYCEYYPEYDKCKQWLEKNLPTEFEKVKL 304
S+ I Y E P+ +K QW E++LP K +L
Sbjct: 204 SLRITYLEPDPDGEKETQWFEEDLPVSVGKFRL 236
>At5g36160.1 68418.m04357 aminotransferase-related similar to
nicotianamine aminotransferase B GI:6469087 from
[Hordeum vulgare subsp. vulgare]
Length = 420
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 587 FDIIPEKWPEIDEDSIEDLGDQKKV 661
FD++PE ++D D +E L D K V
Sbjct: 158 FDLLPENGWDVDLDGVEALADDKTV 182
>At2g20610.2 68415.m02412 aminotransferase, putative similar to
nicotianamine aminotransferase from Hordeum vulgare
[GI:6498122, GI:6469087]; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 436
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 587 FDIIPEKWPEIDEDSIEDLGDQKKV 661
FD++PEK EID + IE + D+ V
Sbjct: 182 FDLLPEKEWEIDLEGIEAIADENTV 206
>At2g20610.1 68415.m02411 aminotransferase, putative similar to
nicotianamine aminotransferase from Hordeum vulgare
[GI:6498122, GI:6469087]; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 462
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 587 FDIIPEKWPEIDEDSIEDLGDQKKV 661
FD++PEK EID + IE + D+ V
Sbjct: 182 FDLLPEKEWEIDLEGIEAIADENTV 206
>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
Length = 792
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 358 WQGYVKIQEERRCSQVSAGISCSSGQEEISHSRVWIE 468
+QGY K EE + AG+ + G + H++ IE
Sbjct: 319 YQGYTKSPEEAVADAIKAGVDINCGTYMLRHTQSAIE 355
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2
Query: 464 LSTFDIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDIIPEKWPEIDEDSI 634
+ TF ++++A K + A +V D++ + G + D+ FD++ + E+D DSI
Sbjct: 169 MCTFKEEMEIARKLENLQKAIEEAV---DDLELMGKLLDE-FDLLQRRAQEVDLDSI 221
>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 551 EIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDQKK 658
E+V++G+V+D+L + + P+ D IED+G KK
Sbjct: 273 EVVLRGEVEDELAERLVNVCPQNVFD-IEDMGKGKK 307
>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 551 EIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDQKK 658
E+V++G+V+D+L + + P+ D IED+G KK
Sbjct: 273 EVVLRGEVEDELAERLVNVCPQNVFD-IEDMGKGKK 307
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,242,703
Number of Sequences: 28952
Number of extensions: 199168
Number of successful extensions: 697
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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