Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0478
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   2.1  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.8  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       23   3.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.7  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   3.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.8  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.8  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   6.4  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   8.4  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 487 RLTRMDIRRNEALYRLHNFL 546
           RL+R DIR  + +Y+L +FL
Sbjct: 4   RLSRNDIRFLKVMYKLSHFL 23


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 561 CRLCYKKVMKPIQCLVTPDIHTGEP 487
           C +C+KK    +       +HTGEP
Sbjct: 197 CPVCHKKFTNALVLQQHIRLHTGEP 221


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +1

Query: 82  IKMGRKNRNVNKF-AQRKRDRKEQEKNPQEK 171
           +K+ ++ R V +   Q +R+R+EQE++ Q++
Sbjct: 59  MKLKKELRAVKEINEQARREREEQERHKQQQ 89


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 576 ETPPCCRLCYKKVMKPIQCLVTPDIHTGEP*LPC 475
           + P  CR+C K   +P         H+GE    C
Sbjct: 247 QKPNVCRICGKSYARPSTLKTHLRTHSGEKPYRC 280


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +1

Query: 82  IKMGRKNRNVNKF-AQRKRDRKEQEKNPQEK 171
           +K+ ++ R V +   Q +R+R+EQE++ Q++
Sbjct: 210 MKLKKELRAVKEINEQARREREEQERHKQQQ 240


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +1

Query: 82  IKMGRKNRNVNKF-AQRKRDRKEQEKNPQEK 171
           +K+ ++ R V +   Q +R+R+EQE++ Q++
Sbjct: 269 MKLKKELRAVKEINEQARREREEQERHKQQQ 299


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = -2

Query: 226 MRHFLEQYLHKPFDYPRSVSLV-------DFSLAPCGHVSFARI 116
           +++   QY+H+P+  P  V          D+SL    H + +R+
Sbjct: 449 LKNMPSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAASRV 492


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 88  MGRKNRNVNKFAQRKR--DRKEQEKNPQEKPNGDN 186
           +G   R +  + Q +R  +RK+ +K  +EK   DN
Sbjct: 194 LGLSERQIKIWFQNRRAKERKQNKKRIEEKSQIDN 228


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 605 PVVLDV-KPHHKVLDMCAAPGSKTAQLIEFLHA--DEDKMPTGFVMANDVN 748
           PVVLDV  PH+ +      P S   Q  +   +    DK+ T    + +VN
Sbjct: 17  PVVLDVIPPHYNIHHGATPPQSPNQQYTKDCSSPTPSDKLNTSTTSSVNVN 67


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 194 LMKILFEKMPHSKNTI 241
           ++KIL EK  H KN I
Sbjct: 170 VLKILVEKYRHQKNFI 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,807
Number of Sequences: 336
Number of extensions: 3560
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)