Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0478
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    79   9e-16
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          71   2e-13
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    33   0.061
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    31   0.25 
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz...    29   1.00 
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    27   2.3  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   3.0  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   4.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   5.3  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   7.0  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   9.3  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.3  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   9.3  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   9.3  

>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 78.6 bits (185), Expect = 9e-16
 Identities = 45/124 (36%), Positives = 63/124 (50%)
 Frame = +1

Query: 196 YEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLPTAFRITGSKGEADALMKIVNSD 375
           Y  ++  N  FE+YY++QK+  E+ + +  Q L E LPT FRIT S   A  +      D
Sbjct: 5   YVYLLDRNENFEKYYRLQKLVTEDDFILLKQKLTEQLPTTFRITASIPHATQVR-----D 59

Query: 376 YFSQLLNXXXXXXXXXXXXXXXPVNLPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAE 555
           YF +                  PV+LPWYP G A+ L +++  IR++  L  L  FLV E
Sbjct: 60  YFIEHYYPLIENARTEDAKIPLPVSLPWYPDGMAFMLDISKEVIRKSPHLKALQEFLVLE 119

Query: 556 TAAG 567
           T AG
Sbjct: 120 TEAG 123



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 33/55 (60%), Positives = 42/55 (76%), Gaps = 6/55 (10%)
 Frame = +2

Query: 596 MIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDK------MPTGFVMAND 742
           M+PP++L+V+ HHKVLDMCAAPGSKTAQL+E LH    K      +P+G V+AND
Sbjct: 133 MVPPLLLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPSGIVIAND 187


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
 Frame = +1

Query: 187 RKAYED---IVRENAAFEEYYKMQKIC---PEEQWPVFMQTLKENLPTAFRITGSKGEAD 348
           ++AY D   IV EN  FE YYK Q +    P +++  FM+ +++ LPT FRI G +  A 
Sbjct: 12  KRAYNDKSEIVLENKQFEGYYKKQNLFRGKPNDEFDSFMEYMRKPLPTTFRICGYRHHAF 71

Query: 349 ALMKIVNSDYFSQLLNXXXXXXXXXXXXXXXPVNLPWYPGGFAWQLRLTRMDIRRNEALY 528
            L       Y   L N               P  LPWYP G A+ +   +  IR++  L 
Sbjct: 72  ELKNHFEKYYVPSLKNVVHEGQTIPP-----PTVLPWYPDGLAYIVDAQKDVIRKSPPLK 126

Query: 529 RLHNFLVAETAAG 567
           RL  FLV+E  AG
Sbjct: 127 RLQRFLVSENEAG 139



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = +2

Query: 596 MIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLH 697
           M+PP+ LDV+PHH +LDMCAAPGSKTAQLIE ++
Sbjct: 149 MLPPLFLDVEPHHVILDMCAAPGSKTAQLIEAVY 182


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 599 IPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVNTA 754
           +P + L  +P+ ++LDM +APG K   +         +  TG + AND N A
Sbjct: 330 LPVMALAPQPNERILDMSSAPGGKVTYVAAL------QKNTGIIFANDSNKA 375


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 79  SIKMGRKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENA 222
           S    R    +N    +K  RK++E +P+ +    NR +Y D+ R ++
Sbjct: 656 SYSRSRSVTPINNINHKKYIRKDRELSPRGRERSSNRNSYSDLSRSSS 703


>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 599 IPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHAD 703
           IPP  + V P H ++D C A     A+ I  +  D
Sbjct: 115 IPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD 149


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 176 TGIIERLMKILFEKMPHSKNTIRCKKSAQKSSGRSSCKLS 295
           TG+ E     L  K+ H+  +I   KS +  SGR  CK++
Sbjct: 244 TGLGEPCFDKLEAKLAHAMMSIPATKSFEIGSGREGCKVA 283


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 103 RNVNKFAQRKRDRKEQEKNPQEK 171
           +N +K  +RK   KE+EK+P++K
Sbjct: 21  KNKDKLERRKERAKEEEKDPEKK 43


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +1

Query: 76  FSIKMGRKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIV 210
           F++  GRKN   +      +   ++E+ P+E    D+ K + D++
Sbjct: 628 FTVGSGRKNPQSSSSLMFNQSSVKEEEEPEETSFSDSSKHFTDLL 672


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +1

Query: 130 KRDRKEQEKNPQEKPNGDNRKAYEDIVREN----AAFEEY--YKMQKICPEEQWPV 279
           K D K QEK PQ + +G  +K    ++ ++     + EE   Y  +K+C   Q+ V
Sbjct: 766 KSDSKVQEKAPQNEADGSLKKDEHVVLSDDYWMKPSIEELSKYPKEKLCSVHQFSV 821


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 106 NVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENA 222
           +VN+    K  ++E+E+  Q+K     R AYE+ ++ +A
Sbjct: 631 SVNQKNVLKAQKEEEERIAQQKREEKRRLAYEESLKRHA 669


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 638 VLDMCAAPGSKTAQL 682
           ++D CAAPG+KT  L
Sbjct: 214 IIDGCAAPGNKTTHL 228


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 110 STNSRKGNVTARSKRKIHKRNRTGIIERLMK 202
           +T SRKGN+  +S R+       G++E ++K
Sbjct: 138 NTPSRKGNLVPQSPRRTIATTCKGVLEDVLK 168


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 130 KRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEE 234
           K + KE + +P+E P G+ ++   ++  +    EE
Sbjct: 619 KENLKEDDNHPRESPQGNLQRELNELDEDKRKLEE 653


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 279 DRPLLFWADFLHL 241
           D P  FW+DFLHL
Sbjct: 533 DYPSSFWSDFLHL 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,832
Number of Sequences: 5004
Number of extensions: 58283
Number of successful extensions: 195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)