Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0478
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)         38   0.009
SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16)         38   0.009
SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)                    29   3.2  
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)                    29   3.2  
SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_45244| Best HMM Match : Protamine_P2 (HMM E-Value=4.5)              29   4.3  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   4.3  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     29   5.6  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  28   7.5  
SB_21807| Best HMM Match : JmjC (HMM E-Value=4.2)                      28   7.5  
SB_49622| Best HMM Match : E-MAP-115 (HMM E-Value=2.4)                 28   7.5  
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8)                   28   9.9  
SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)              28   9.9  
SB_37383| Best HMM Match : bZIP_2 (HMM E-Value=2.5e-06)                28   9.9  
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)
          Length = 219

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = +2

Query: 596 MIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMAND 742
           M+P + L  +   +VLDMCAAPG KT  L   +        TG V+AND
Sbjct: 144 MLPVMALAPQEKERVLDMCAAPGGKTTYLAALM------KNTGIVVAND 186


>SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16)
          Length = 467

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = +2

Query: 596 MIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMAND 742
           M+P + L  +   +VLDMCAAPG KT  L   +        TG V+AND
Sbjct: 392 MLPVMALAPQEKERVLDMCAAPGGKTTYLAALM------KNTGIVVAND 434


>SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -3

Query: 723 PVGILSSSACRNSMSCAVLDPGAAHMS 643
           P   +S S C  SM C VLDPGAAH+S
Sbjct: 55  PAMPVSLSPCSISMICDVLDPGAAHVS 81


>SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 560

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 193 AYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLPTAFRITGSKGEADALMKIVNS 372
           A E ++R   AF   +K Q+   E   P F     E+LP +    G    AD +MK ++ 
Sbjct: 13  ARESVLRWFVAFTVRFKRQEEGQEPSSPTFTSKSMESLPPSTTTPGMGSTAD-MMKSISK 71

Query: 373 D 375
           D
Sbjct: 72  D 72


>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 688

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 193 AYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLPTAFRITGSKGEADALMKIVNS 372
           A E ++R   AF   +K Q+   E   P F     E+LP +    G    AD +MK ++ 
Sbjct: 57  ARESVLRWFVAFTVRFKRQEEGQEPSSPTFTSKSMESLPPSTTTPGMGSTAD-MMKSISK 115

Query: 373 D 375
           D
Sbjct: 116 D 116


>SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 245 CKKSAQKSSGRSSCKLSKRIYLRHSV 322
           C +SA +SSGRS CK+S R + + ++
Sbjct: 321 CAESAVRSSGRSLCKMSGREWAQGNI 346


>SB_45244| Best HMM Match : Protamine_P2 (HMM E-Value=4.5)
          Length = 82

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 76  FSIKMGRK-NRNVNKFAQRKRDRKEQEKNPQEKPNGDNRK 192
           FS+K  RK NR  N+   RKR RK   K  +++     RK
Sbjct: 38  FSLKRKRKRNRKRNRKRNRKRKRKRNRKRNRKRNRSRQRK 77


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 657 AAHMSSTLW*GFTSNTTGGIIDTCSCLETPPCCRLCYKKVMKPIQCLVTPDIHTGEP 487
           A    + +W  ++ N  GG +DT +C         C    M PIQ ++  D + G P
Sbjct: 596 ALTFGAPIWNPWSYNPEGGGVDTQNCTSQHAVAENCSTNAMCPIQKVLIED-NNGNP 651


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 97  KNRNVNKFAQR-KRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYY---KMQKICPE 264
           K R+ ++   R +RDRKE+ ++   +   ++ K     +R  A+ EEY    +MQ++   
Sbjct: 424 KERDKDRHRDRDRRDRKEKTRDRTSRSPSESPKRSSRSIRNIASEEEYVILAQMQRVSDT 483

Query: 265 EQ 270
           EQ
Sbjct: 484 EQ 485


>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/70 (22%), Positives = 37/70 (52%)
 Frame = +1

Query: 109  VNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQ 288
            ++K  +   +R  +EK P E+   + ++  E++  +    + +++ +K+  EE++    +
Sbjct: 1793 LSKLEEEMNNRLAREKKPLEEEVRELQEENEELKNQRWEMKVHFRREKVKLEEEF----E 1848

Query: 289  TLKENLPTAF 318
              KENL T F
Sbjct: 1849 REKENLETQF 1858


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 97  KNRNVNKFAQRKRDRKEQE-KNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKI-CPEE 267
           KNR   K A+ K  R+ QE K P+E  N +++K  E    E    + + K  +I  PEE
Sbjct: 223 KNRKHQKKARTKNTRRGQEQKTPEEGKNKNHQK-QEQKTPEEGKNKNHQKRARIETPEE 280


>SB_21807| Best HMM Match : JmjC (HMM E-Value=4.2)
          Length = 329

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/82 (23%), Positives = 34/82 (41%)
 Frame = +2

Query: 83  LRWVEKIGTSTNSRKGNVTARSKRKIHKRNRTGIIERLMKILFEKMPHSKNTIRCKKSAQ 262
           LR+     T+  +RK N          K   T I  R + ++ +  P  +NTI+   S  
Sbjct: 127 LRYEPNTVTNHKTRKRNNILWYNPPFSKNTSTNIGHRFLTLIDKHFPKDRNTIKISYSCM 186

Query: 263 KSSGRSSCKLSKRIYLRHSVSQ 328
            ++ +     +KRI    S ++
Sbjct: 187 NNTKQIIDNHNKRIITASSATE 208


>SB_49622| Best HMM Match : E-MAP-115 (HMM E-Value=2.4)
          Length = 313

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 116 NSRKGNVTARSKRKIHKRNRTGIIERLMKILFEKMPHSKNTIRCKKSAQKSSGRSSCKLS 295
           N+RKG ++  SK +  K  R GI+  L K    K  H    +   K+ Q  + R    L+
Sbjct: 170 NTRKGKLSNLSKARQGKNTRKGILLNLDKAWQGKNTHKGIILNLGKARQDKNTRKGILLN 229


>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 97  KNRNVNKFAQRKRDRKEQEKNPQEKPNGDNR 189
           K+    K   +K ++KE+EK P EK   +++
Sbjct: 640 KDEEAEKEEDKKEEKKEEEKKPDEKKEDESK 670


>SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8)
          Length = 302

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 76  FSIKMGRKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYED 204
           F ++   K R     +QRK    +++K+P  K + D R+  +D
Sbjct: 197 FPVRCSSKEREELLLSQRKEQEHKEQKSPDVKRSPDVRRTPDD 239


>SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)
          Length = 424

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 166 EKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLP 309
           E P GD R A    VR     ++  +   ICP+E+  VF++ L  ++P
Sbjct: 83  EAPIGDLRFAKSKPVRSWNGVKDATQHGPICPQEKDEVFIRMLNIDIP 130


>SB_37383| Best HMM Match : bZIP_2 (HMM E-Value=2.5e-06)
          Length = 222

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 94  RKNRNVNKFAQRKRDRKEQ----EKNPQEKPNGDNRKAYEDIVRE 216
           RKN   +K  + KR  KEQ    EK  +EK N   R   ED+ ++
Sbjct: 162 RKNNEASKRTREKRRNKEQELLKEKEIKEKENKALRTQVEDLEKQ 206


>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 85  KMGRKNRNVNKFAQRKRDRKEQEKNPQEKP-NGDN-RKAYEDIVRENAAFEEYYKMQKIC 258
           K  +KN+N NK  ++ + +KE+E    EK    +N  +  E+  +E    E+  + +K  
Sbjct: 40  KKNKKNKNKNKKKKKMKKKKEEEAEVGEKTLEAENEEEKIEETEKEKDEEEKIEEEEKEG 99

Query: 259 PEEQ 270
            EE+
Sbjct: 100 GEEE 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,500,830
Number of Sequences: 59808
Number of extensions: 478456
Number of successful extensions: 1498
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)