Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0478
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    72   5e-13
AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    37   0.019
Z77662-9|CAB01198.1|  456|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U97193-11|AAB52436.1|  214|Caenorhabditis elegans Hypothetical p...    31   0.93 
AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical...    31   0.93 
AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical ...    31   0.93 
U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AC024855-2|AAM97980.2|  466|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC024855-1|ABA00155.1|  468|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    30   2.2  
AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z73906-16|CAA98123.1|  722|Caenorhabditis elegans Hypothetical p...    29   5.0  
Z72516-4|CAA96690.1|  722|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z66498-4|CAA91292.1|  142|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z49908-4|CAA90095.1|  535|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z11126-3|CAA77474.2|  487|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U49945-4|AAC47924.1|  535|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 40/151 (26%), Positives = 73/151 (48%)
 Frame = +1

Query: 115 KFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTL 294
           KF  + +  + +E   ++  +    + Y  + +EN  + +YYK Q + P EQ+  F   L
Sbjct: 8   KFKSKNKGHEPRENVWRDDRDAPGNQGYRMVEKENEKYWQYYKEQNVFPLEQFDEFRAAL 67

Query: 295 KENLPTAFRITGSKGEADALMKIVNSDYFSQLLNXXXXXXXXXXXXXXXPVNLPWYPGGF 474
           + +LP +FR  G   + + L+  + + +F +++                P +LPWY    
Sbjct: 68  QRDLPVSFRFQGCHKDREQLIHEMENRFFGKIME-------AGDTAVCVPKSLPWYKE-- 118

Query: 475 AWQLRLTRMDIRRNEALYRLHNFLVAETAAG 567
           A+Q  ++R  +R +  L +LHNFLV E   G
Sbjct: 119 AYQTPMSRTAVRSHPILAQLHNFLVTEAELG 149



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/51 (56%), Positives = 38/51 (74%)
 Frame = +2

Query: 596 MIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVN 748
           MIPP++L     H VLD+CAAPGSKT QL+E +H +E+  P G V+ANDV+
Sbjct: 159 MIPPLLLAPTSEHFVLDLCAAPGSKTTQLLEMIHENEEN-PKGMVIANDVD 208


>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +2

Query: 596 MIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVN 748
           ++P + L  +P  +VLDMC+APG KT+ +   +        +G + AND N
Sbjct: 295 LLPVMALAPQPGDRVLDMCSAPGGKTSHIAALM------KNSGVLFANDAN 339


>Z77662-9|CAB01198.1|  456|Caenorhabditis elegans Hypothetical
           protein F47B8.10 protein.
          Length = 456

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 130 KRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLP 309
           K+   ++E NP++K  G  R     IV  + +F   + M+     E W     T  +  P
Sbjct: 185 KQTEDDEEPNPEKKKKGGLRTIVGSIVIWHISFVYLFTMEMRTICETWVQLFLTDSKISP 244

Query: 310 TAFRIT 327
            AF+IT
Sbjct: 245 DAFQIT 250


>U97193-11|AAB52436.1|  214|Caenorhabditis elegans Hypothetical
           protein C06A5.2 protein.
          Length = 214

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 79  SIKMGRKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQK 252
           +IK G+K   +N   + K++  + EK P+E P   N+   +   +E     E  K++K
Sbjct: 27  TIKKGKKFPMMNMIVKNKKNEVQVEKKPEEVPE-QNKSVKDQTKKEEVKVVEEDKVEK 83


>AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4a protein.
          Length = 285

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 599 IPPVVLDVKPHHKVLDMCAAPGSKTA 676
           +P  +L+ +P  +V D CAAPG KT+
Sbjct: 71  LPAFLLNPRPGSQVFDTCAAPGMKTS 96


>AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4b protein.
          Length = 439

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 599 IPPVVLDVKPHHKVLDMCAAPGSKTA 676
           +P  +L+ +P  +V D CAAPG KT+
Sbjct: 225 LPAFLLNPRPGSQVFDTCAAPGMKTS 250


>U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical
           protein T23B3.5 protein.
          Length = 211

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 91  GRKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRK 192
           G K     K  ++  D+KE+EK  +EK +GD ++
Sbjct: 70  GEKKDGEKKSEKKDGDKKEEEKKDEEKKDGDKKE 103


>AC024855-2|AAM97980.2|  466|Caenorhabditis elegans Hypothetical
           protein Y71G10AL.1a protein.
          Length = 466

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 127 RKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQW 273
           +K + K  EK  ++KP    +K YED   E A FE Y+      PE QW
Sbjct: 209 KKEEEKGSEKK-EKKPEPPKKKVYED-EDEKAPFEMYWDG---APEFQW 252


>AC024855-1|ABA00155.1|  468|Caenorhabditis elegans Hypothetical
           protein Y71G10AL.1b protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 127 RKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQW 273
           +K + K  EK  ++KP    +K YED   E A FE Y+      PE QW
Sbjct: 211 KKEEEKGSEKK-EKKPEPPKKKVYED-EDEKAPFEMYWDG---APEFQW 254


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 91  GRKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRK 192
           G K     K  ++  D+KE+EK  +EK +GD ++
Sbjct: 70  GEKKDGDKKSEKKDGDKKEEEKKDEEKKDGDKKE 103


>AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.21 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 596 MIPPVVLDVKPHHKVLDMCAAPGSKT 673
           ++P + L ++    +LDMCAAPG K+
Sbjct: 242 LLPVLALGLQKDDSLLDMCAAPGGKS 267


>Z73906-16|CAA98123.1|  722|Caenorhabditis elegans Hypothetical
           protein T25G3.4 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 41  TSFENPITNIPSSQL-RWVEKIGTSTNSRKGNVTARSKRKIHKRNRTGIIERLMKILFEK 217
           T+  N   N+   ++ R  E+       RKG++T    RK  + +   I ER++  L  +
Sbjct: 612 TAVSNVALNLTKEEMQRAKERFQQLDKDRKGHITVNDLRKHFREHNQKIDERVLHELLNE 671

Query: 218 MPHSKN 235
           +  +KN
Sbjct: 672 VDLNKN 677


>Z72516-4|CAA96690.1|  722|Caenorhabditis elegans Hypothetical
           protein T25G3.4 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 41  TSFENPITNIPSSQL-RWVEKIGTSTNSRKGNVTARSKRKIHKRNRTGIIERLMKILFEK 217
           T+  N   N+   ++ R  E+       RKG++T    RK  + +   I ER++  L  +
Sbjct: 612 TAVSNVALNLTKEEMQRAKERFQQLDKDRKGHITVNDLRKHFREHNQKIDERVLHELLNE 671

Query: 218 MPHSKN 235
           +  +KN
Sbjct: 672 VDLNKN 677


>Z66498-4|CAA91292.1|  142|Caenorhabditis elegans Hypothetical
           protein M195.4 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 124 QRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEE--YYKMQKICPEEQWPVFMQTLK 297
           Q K D K++E   +EK  GD  K    +  E A   E    K QK  PE + P      K
Sbjct: 24  QVKNDVKKEEPKNEEKKPGDENKNPAAVGAEGAGAAEKPQDKSQKPFPEIKMPTESMKKK 83

Query: 298 EN 303
           +N
Sbjct: 84  KN 85


>Z49908-4|CAA90095.1|  535|Caenorhabditis elegans Hypothetical
           protein C07E3.4 protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/53 (20%), Positives = 29/53 (54%)
 Frame = +1

Query: 94  RKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQK 252
           ++ +   K  + KR+RKE ++  +++   +++K  +  VR++      Y M++
Sbjct: 120 KEKKEKEKTDEEKRERKEDKREDKKEEKKEDKKEEKKEVRKDCRENSMYSMER 172


>Z11126-3|CAA77474.2|  487|Caenorhabditis elegans Hypothetical
           protein ZK643.5 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 79  SIKMGRKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVREN 219
           S +  R+ R+  K  +  RDRK+  ++ +     D+RK ++D  R++
Sbjct: 272 SSRSDRRRRDDRKRPREDRDRKDYRRDGRRDGRRDDRKRHDDRRRDS 318


>U49945-4|AAC47924.1|  535|Caenorhabditis elegans Hypothetical
           protein C02H7.1 protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 107 TSTNSRKGNVTARSKRKIHKRNRTGIIERLMKILFEKMPHSKNTIRCK-KSAQKSSGRSS 283
           TS NSR G    + K+K+ K ++ G  E   K   +K    K T   K KS +K S    
Sbjct: 110 TSFNSRNGTGEEKKKKKVKKEDKKGDEEE--KSTTKKRSSKKETHEEKEKSEKKKSAEEK 167

Query: 284 CKLSK 298
            K  K
Sbjct: 168 EKKKK 172


>AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical
           protein C17F3.3 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 97  KNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEE 234
           K+++  K     +D+KE EK   +KP G+  +  E++ +E    E+
Sbjct: 135 KSKDEEKKKDEVKDKKEDEKKDDKKP-GEKEEKKEEVKKETKKEEK 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,067,012
Number of Sequences: 27780
Number of extensions: 345549
Number of successful extensions: 1289
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)