Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0478
(785 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains P... 92 3e-19
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P... 83 2e-16
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P... 32 0.50
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 31 1.1
At3g48980.1 68416.m05350 expressed protein 29 2.6
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm... 29 2.6
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 29 2.6
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 29 3.5
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 29 3.5
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ... 28 6.1
At5g57370.1 68418.m07168 expressed protein low similarity to nuc... 28 8.1
At3g14880.1 68416.m01881 DNA-binding protein-related low similar... 28 8.1
>At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 808
Score = 92.3 bits (219), Expect = 3e-19
Identities = 58/172 (33%), Positives = 81/172 (47%), Gaps = 12/172 (6%)
Frame = +1
Query: 88 MGRKNRNVNKFAQRKRDRKEQEKNPQEKPNGD------------NRKAYEDIVRENAAFE 231
MGR R+ + QRK D KE +N ++P D + +E IV N FE
Sbjct: 1 MGRGGRHRGR-TQRK-DFKESRENVWKRPKSDASVDGSDNAVPEQKPTWEPIVTVNPNFE 58
Query: 232 EYYKMQKICPEEQWPVFMQTLKENLPTAFRITGSKGEADALMKIVNSDYFSQLLNXXXXX 411
EYYK Q I E+W +FM+ L++ LP AFR+ + D ++ I+ +D+ L
Sbjct: 59 EYYKKQGIVKAEEWDLFMEILRKPLPAAFRVNSNGQFCDEIISILENDFMKSL---QAEA 115
Query: 412 XXXXXXXXXXPVNLPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAG 567
P LPWYP AW +R +IR+N+ L R H FL E G
Sbjct: 116 IEGGELEAIKP--LPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLENEVG 165
Score = 69.3 bits (162), Expect = 3e-12
Identities = 31/53 (58%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Frame = +2
Query: 596 MIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLH--ADEDKMPTGFVMANDVN 748
M+PP+ LDV P H VLDMCAAPGSKT QL+E +H ++ +P G V+ANDV+
Sbjct: 175 MVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDVD 227
>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 783
Score = 83.4 bits (197), Expect = 2e-16
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
Frame = +1
Query: 91 GRKNR-NVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEE 267
GR++R + +K Q + + + P + + + + N FEEYYK Q+I +
Sbjct: 4 GRRHRGSTSKRNQIENSNDDNVRKPLKSEASFDSNNLQKPICSNLHFEEYYKEQRIVKAQ 63
Query: 268 QWPVFMQTLKENLPTAFRITGSKGEADALMKIVNSDYFSQLLNXXXXXXXXXXXXXXXPV 447
+W FM+ L++ LP AFR+ + D + + +D+ +++ P
Sbjct: 64 EWDSFMEFLRKPLPAAFRVYSNGQFCDEIRLKLENDF---MISLQAEAIESGELEAIKP- 119
Query: 448 NLPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAG 567
LPWYP AW +R +IR+N+ L R H FL ET AG
Sbjct: 120 -LPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLETEAG 158
Score = 69.3 bits (162), Expect = 3e-12
Identities = 31/53 (58%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Frame = +2
Query: 596 MIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLH--ADEDKMPTGFVMANDVN 748
M+PP+ LDV P H VLDMCAAPGSKT QL+E +H ++ +P G V+ANDV+
Sbjct: 168 MVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHESSEPGSLPNGMVVANDVD 220
>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 599
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 614 LDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKM 715
LD + ++LDMCAAPG KT I L DE ++
Sbjct: 292 LDPQKGERILDMCAAPGGKTT-AIAILMNDEGEI 324
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +2
Query: 65 NIPSSQLRWVEKIGTSTNSRKGNVTARSKRKIHKRNRTGIIERLMKILFEKMPHSKNTIR 244
N+ SS+ + V++ SRK S++K + TG+ R K +FE+ +S +
Sbjct: 298 NVRSSEKKVVDQSAKRLKSRKEASQMHSRKK-RDESSTGVDSRYQKQIFEEGENSNQAVT 356
Query: 245 CKKSAQKSSGRSSCKLSK 298
+ +K ++ ++S+
Sbjct: 357 LNQRRRKKFSQTENRVSE 374
>At3g48980.1 68416.m05350 expressed protein
Length = 539
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 295 KENLPTAFRITGSKGEADALMKIVNSDYF 381
K+N PT+FR + +GE+D DYF
Sbjct: 112 KDNYPTSFRSSAGEGESDRSPSATCPDYF 140
>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
antitermination NusB domain-containing protein low
similarity to SP|P36929 SUN protein (FMU protein)
{Escherichia coli}; contains Pfam profiles PF01189:
NOL1/NOP2/sun family, PF01029: NusB family
Length = 523
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 611 VLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVN 748
V+ +P +++D CAAPG KT + L G + A DVN
Sbjct: 325 VVKPQPGERIMDACAAPGGKTLFMASCLKGQ------GMIYAMDVN 364
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +1
Query: 97 KNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQK 252
++R+ + R+RDR+E+++ P ++ N + + E RE A E+ + +K
Sbjct: 106 RDRDRERERDRERDRRERDREP-DRRNREKEREEEVKAREKARVEKLVEREK 156
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/75 (21%), Positives = 38/75 (50%)
Frame = +1
Query: 85 KMGRKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPE 264
++GR+ R +++ + + ++K++E+N ++ + R+ +E + E+ P
Sbjct: 393 EIGREERESDRWERERMEQKDRERNKEKDKDHIKREPRTGAEKEISQNEKELGEASAKPS 452
Query: 265 EQWPVFMQTLKENLP 309
EQ V + K+N P
Sbjct: 453 EQEYVAPEQKKQNEP 467
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/75 (21%), Positives = 38/75 (50%)
Frame = +1
Query: 85 KMGRKNRNVNKFAQRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPE 264
++GR+ R +++ + + ++K++E+N ++ + R+ +E + E+ P
Sbjct: 393 EIGREERESDRWERERMEQKDRERNKEKDKDHIKREPRTGAEKEISQNEKELGEASAKPS 452
Query: 265 EQWPVFMQTLKENLP 309
EQ V + K+N P
Sbjct: 453 EQEYVAPEQKKQNEP 467
>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
family
Length = 671
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Frame = +2
Query: 599 IPPVVLDVKPHHKVLDMCAAPGSKT---AQLIE---FLHADEDKMP 718
+P + L + +V+DM AAPG KT A L++ ++A+E K+P
Sbjct: 333 LPVMALAPREKERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVP 378
>At5g57370.1 68418.m07168 expressed protein low similarity to
nucleic acid binding protein [Homo sapiens] GI:431953
Length = 219
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 130 KRDRKEQEKNPQEKPNGDNRKAYEDIVRE 216
+RDR+E+E++ +P+ D R+ +D R+
Sbjct: 3 ERDRRERERDKDREPDRDRRRGRDDRDRD 31
>At3g14880.1 68416.m01881 DNA-binding protein-related low similarity
to tumor-related protein [Nicotiana glauca x Nicotiana
langsdorffii] GI:688423, SP|O24160 TGACG-sequence
specific DNA-binding protein TGA-2.1 {Nicotiana tabacum}
Length = 237
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +2
Query: 44 SFENPITNIPSSQLRWVEKIGTSTNSRKGNVTARSKRKIHKRNRTGIIERLMKILFEKMP 223
S E I + Q W+E++ N RS + H+ + TG ERL + + M
Sbjct: 2 SQETAIASFKKFQQSWIEQLRNHLNH------LRSAQNHHRNSATGDEERLREAVDRVME 55
Query: 224 HSKNTIRCKKSA 259
H + R K +A
Sbjct: 56 HFREYHRAKWAA 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,841,283
Number of Sequences: 28952
Number of extensions: 311223
Number of successful extensions: 954
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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