Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0473
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.4  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.7  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 245 QPTHPIRLGLALNFSVFYYEILNSPDK 325
           +P HP+R+   ++FS   Y+ + + D+
Sbjct: 375 EPVHPVRVNTIISFSGERYDFVINADQ 401


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 245 QPTHPIRLGLALNFSVFYYEILNSPDK 325
           +P HP+R+   ++FS   Y+ + + D+
Sbjct: 375 EPVHPVRVNTIISFSGERYDFVINADQ 401


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 634 HFYKRRLASASVMIPRQTTFSNVTRFLINTDENKCVCWGECGEILVVA 491
           +F  + LA + + I    T ++V  F+I  + +    +  CG +++VA
Sbjct: 490 YFISKTLAESPIFIIIPVTLTSVCYFMIGLNSHGFRFYIACGIMILVA 537


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 255 CVGCIFALLISKAS 214
           C+G  FALL+SK +
Sbjct: 437 CIGQRFALLVSKVA 450


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -2

Query: 634 HFYKRRLASASVMIPRQTTFSNVTRFLINTDENKCVCWGECGEILVVA 491
           +F  + LA + + I      ++V  F+I  +      +  CG +++VA
Sbjct: 490 YFISKTLAESPIFIIIPVILTSVCYFMIGLNSQGFRFYIACGIMILVA 537


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,760
Number of Sequences: 336
Number of extensions: 3146
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)