Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0471
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   31   1.1  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    30   2.0  
SB_53134| Best HMM Match : PAN (HMM E-Value=0.0002)                    30   2.0  
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)                29   2.6  
SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)                   29   3.5  
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_35554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_53564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_41611| Best HMM Match : Hep_Hag (HMM E-Value=2.9e-13)               28   8.0  
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_24035| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 112  TWSKATKTSQ--RKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAK 261
            T +KA K ++  +KP    +K K K+ SS +     P+ PT  SR  + KAK
Sbjct: 1897 TTAKALKKAKGKQKPGSATKKTKPKQDSSKKKRKRSPSPPTSASREGTRKAK 1948


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = +2

Query: 362 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*L 541
           SNP +     P+   S PS+EP      + S+S +    P P S P   P    S     
Sbjct: 505 SNPSSDPSPNPS---SNPSSEPSPNPISNPSISTSPISNPHPSSNPSPHPSSNPSSEPSP 561

Query: 542 CPRAGPISESSP 577
            P + P S+ SP
Sbjct: 562 NPSSNPSSDPSP 573



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +2

Query: 401 RESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPISESSP 577
           + S P + P +  S   + S      P P S P   P P  S      P + P S+ SP
Sbjct: 455 KTSNPISNPSISTSPISNPSPRPHPSPHPSSNPSPNPSPNPSSDPSPNPSSNPSSDPSP 513


>SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/81 (28%), Positives = 32/81 (39%)
 Frame = -1

Query: 273 CYTDFGLGTAIATDSGRLGWRVEPMLCTADFLALAFAIEFDRLALACFCGFGPCQ*PHRL 94
           CYT+  LGTA+        + +E       FL     I  +R A+         +   + 
Sbjct: 94  CYTE--LGTAVQKSGAEYAYLMEAFGPIPAFLFAWTGIIINRPAITAIVSLIFAEYVAKP 151

Query: 93  FFPECGEPFVVPTALSLC*LV 31
           FFPEC  P  V   L L  +V
Sbjct: 152 FFPECAPPPAVVKLLGLACIV 172


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 311  PSYS*SNNSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPK 490
            P YS   +S   Q  ++S+P + S  +P+   S P +EP+LP    +S +  T Q     
Sbjct: 967  PEYSSPPSSS--QSTFLSSPSSTSLQQPS-PSSQPHSEPRLPSPSLESSTLQTSQLSNDS 1023

Query: 491  SGPVARPEP 517
                  P+P
Sbjct: 1024 PNSYTAPQP 1032


>SB_53134| Best HMM Match : PAN (HMM E-Value=0.0002)
          Length = 648

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 326 SNNSKPGQLWWVSN-PRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPK 490
           S + KPGQL + ++ P+T+ +L+ T +    S+E K  +  S   +R    +P+ K
Sbjct: 563 SRSRKPGQLLFGNDLPKTLQELKTTNKIMNKSSEAKPFKRSSNMTARPGNNYPQNK 618


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +1

Query: 70   RFSTFRKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRS 249
            + S ++++    S+ WS   K   +KP  L + +K  + +   HG +  T  +   + R 
Sbjct: 2517 QLSNYKRRWHKSSIAWSSFEKRQLQKPSSLQQSKKKDDPAGGSHGKNRSTSFSGEKKKRP 2576

Query: 250  SKAK 261
              A+
Sbjct: 2577 KSAQ 2580


>SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)
          Length = 288

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
 Frame = +1

Query: 109 LTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIML-- 282
           +T ++ T+T+     ++ R R  +   +  H        TRV RNR ++  ++ T +   
Sbjct: 78  VTRTRVTRTNVTCT-RVTRTRVTRTYLTRSHVTRTQVTRTRVFRNRVTRTNVTRTRVTRT 136

Query: 283 -----IILLCPLERTQLQLVQQFQTRAAMVGLKPKDSFKTSPNNQGINSKR--RTKITTV 441
                 +      RTQ+   + F+ R     +      +T      +   R  RT+ T  
Sbjct: 137 RVTRTYLTRNHFPRTQVTRTRVFRNRVTRTNVTRTRFTRTRVTRTRVTRTRFTRTRFTRT 196

Query: 442 RLKISFKGNRTISRTKIRSSCKARTSME*TNLTMSK 549
           R+  +      ++RT++  +   RT +  T+LT ++
Sbjct: 197 RVTRTHLTRTRVTRTRVTRTHLTRTRVTRTHLTRTR 232


>SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)
          Length = 397

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 124 ATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSK 255
           A +T  RKP+ L R    +E+       H  + PTR+ +  +S+
Sbjct: 175 AIQTPPRKPVNLTRSGSSEELLEKSTTSHKTSSPTRMFKRATSE 218


>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 401 RESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWS 526
           R  +P+A P +P  G ++ +   + FP     P  +P+P  S
Sbjct: 215 RPVVPTARP-IPNGGEETTTATNQAFPRLPPPPAKKPKPAVS 255


>SB_35554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 365 NPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARP-EPVWSEPT*L 541
           NPR VS  R    ES P + P+  R   K   ++ E+FP P+   VAR      S     
Sbjct: 287 NPRKVSGTR----ESCPKSHPRSFRDPRKLPEKSPEKFPGPEK--VARKVTREVSGTRES 340

Query: 542 CPRAGPISESSP 577
           CP++ P S   P
Sbjct: 341 CPKSHPRSFRDP 352


>SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1326

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = -1

Query: 579  IGLDSEIGPALGHS*VGSLHTGSGLATGPDFGSGNCSVALETDFEPDRGNFGSALGIDSL 400
            +G+D+++   + +  VG      G+ T    G     V ++TD     G     +G+D+L
Sbjct: 1221 VGVDTDVVTGVDNLVVGVETLVVGVDTDVVTGVDTLVVGVDTDVVT--GVDTLVVGVDTL 1278

Query: 399  IVGRSFETVLGFET 358
            +VG   + V+G ET
Sbjct: 1279 VVGVDTDVVVGVET 1292


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 407 SIPSAEPKLPRSGSKSVSRATEQFPEPKS--GPVARPEPVWSEPT*LCPRAGPISES 571
           S+    P+LPR  + S ++     P PK    PV RP  V + P  + PRA    ES
Sbjct: 202 SVEPGLPQLPRPRTNSSNKKKSAPPLPKHVVSPVKRPNKVKAPPP-IPPRASESIES 257


>SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 308 VPSYS*SNNSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPE- 484
           VP  + SN    G L  + +   +  +R  +RE +  AE + P SGS   S  T   P  
Sbjct: 541 VPPTTPSNTPIQG-LESIEDNMNLEAIRNALREDLTPAEGRPPSSGSSGRSTPTRWHPRT 599

Query: 485 PKSG 496
           P SG
Sbjct: 600 PGSG 603


>SB_53564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = +1

Query: 136 SQRKPIKLNRKR-------KCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIMLIILL 294
           S++KP+K  + R         ++ S +  GL+   KP +  ++R + A I++ I L ++L
Sbjct: 159 SRKKPVKSGKSRISSIQYTHSRQRSQSSCGLYKSVKPVQSGKSRFASAMIALPIKLQVVL 218


>SB_41611| Best HMM Match : Hep_Hag (HMM E-Value=2.9e-13)
          Length = 422

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -1

Query: 579 IGLDSEIGPALGHS*VGSLHTGSGLATGPDFGSGNCSVALETDFEPDRGNFGSALGIDSL 400
           +G+D+++   +    VG      G+ T    G     V ++TD       F   +G+D+L
Sbjct: 107 VGVDTDVVTGVETLVVGVETLVVGVDTDVVTGVDTLVVGVDTDVVTGVDTF--VVGVDTL 164

Query: 399 IVGRSFETVLGFET 358
           +VG   + V G ET
Sbjct: 165 VVGVDTDVVTGVET 178


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 133 FLWLWTMSMTPPIIFSGMWRTFRGSNSAVVVLISTTKSMTS 11
           FL++   S T PI++S   +TFR +   ++ + ST +S +S
Sbjct: 634 FLFVLVNSCTNPILYSWRLKTFRNALKKLLGIKSTRQSSSS 674


>SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -1

Query: 579 IGLDSEIGPALGHS*VGSLHTGSGLATGPDFGSGNCSVALETDFEPDRGNFGSALGIDSL 400
           +G+D+++   +    VG      G+ T    G     V ++TD       F   +G+D+L
Sbjct: 765 VGVDTDVVTGVETLVVGVETLVVGVDTDVVTGVDTLVVGVDTDVVTGVDTF--VVGVDTL 822

Query: 399 IVGRSFETVLGFET 358
           +VG   + V G ET
Sbjct: 823 VVGVDTDVVTGVET 836


>SB_24035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -1

Query: 579 IGLDSEIGPALGHS*VGSLHTGSGLATGPDFGSGNCSVALETDFEPDRGNFGSALGIDSL 400
           +G+D+++   +    VG      G+ T    G     V ++TD       F   +G+D+L
Sbjct: 572 VGVDTDVVTGVETLVVGVETLVVGVDTDVVTGVDTLVVGVDTDVVTGVDTF--VVGVDTL 629

Query: 399 IVGRSFETVLGFET 358
           +VG   + V G ET
Sbjct: 630 VVGVDTDVVTGVET 643


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,826,386
Number of Sequences: 59808
Number of extensions: 395237
Number of successful extensions: 1542
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)