Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0470
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511...    29   2.7  
08_02_1461 - 27299891-27301870                                         28   6.2  

>02_05_0924 -
           32749682-32750200,32750756-32750959,32751062-32751109,
           32751769-32751819,32751907-32752032,32752117-32752257,
           32752750-32752971,32753160-32753312,32753536-32753718,
           32753964-32754110,32754212-32754319,32754426-32754530,
           32754824-32754928,32755243-32755310,32755498-32755576,
           32755876-32755935,32756023-32756076,32756168-32756233,
           32756701-32756753,32757042-32757096,32757645-32757787,
           32758236-32758333,32758436-32758716
          Length = 1022

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 338 WAASSSTHLRNKKNKKVVTAFTLRPSRISGHL 243
           W A   T +R+++N  V  A+ + P+ + GHL
Sbjct: 106 WYADGDTVVRSEQNPSVAYAYVVLPTGVLGHL 137


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 471 LLHGRNRQGGGTYPRGLKRGPTISK 545
           LL GR R GGG + RGL   P +S+
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVSR 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,097,952
Number of Sequences: 37544
Number of extensions: 331731
Number of successful extensions: 658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)