Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0469
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF039049-4|AAB94250.2|  293|Caenorhabditis elegans Serpentine re...    28   5.8  

>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 483 RNLKLCNA-CDKFDNLYSLMLQV 548
           RNL+ C A C KFD +YSL ++V
Sbjct: 651 RNLRACEAICHKFDKIYSLDMKV 673


>AF039049-4|AAB94250.2|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein65 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 385 CLNTFYREIRTFCFPLSSFCLIFYSYGN*FKKSVT*NYVM 504
           C   F  EIR   F  + FC I  +YG+  K +V   ++M
Sbjct: 143 CYFYFDEEIRFLTFTKTPFCAIIGTYGDFLKNTVIVTFMM 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,656
Number of Sequences: 27780
Number of extensions: 229823
Number of successful extensions: 362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)