Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0466
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36931| Best HMM Match : FabA (HMM E-Value=5.5)                      43   3e-04
SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.057
SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.100
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.30 
SB_17277| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 29   4.9  
SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)         28   6.5  
SB_11635| Best HMM Match : Borrelia_P13 (HMM E-Value=9.9)              28   6.5  
SB_55122| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_10124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_36931| Best HMM Match : FabA (HMM E-Value=5.5)
          Length = 702

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = -1

Query: 370 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSL 203
           + FKR   P+ L +A+TI K+QGQT+  C + + +        YVA SRV K  S+
Sbjct: 629 VTFKRTVLPVVLGYAITICKAQGQTLHKCIVWMDSDFVPAASGYVALSRVRKLESI 684


>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = -1

Query: 361 KRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 197
           +R   P  LA+++TI+KSQG T+    +D+     + G  YVA SRV   SS  +
Sbjct: 418 ERQQLPRKLAWSLTIHKSQGLTLPKAWVDIGKSEKTPGISYVALSRVKALSSCVI 472


>SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = -1

Query: 364 FKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 197
           ++R   P  LA+++TI+KS+G T+    +D+     + G  Y A SRV   SS  +
Sbjct: 339 YERQQLPFKLAWSLTIHKSEGITLPKAWVDIGKSEKTPGISYAALSRVKALSSCVI 394


>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -1

Query: 358 RIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV 221
           R  FPI L++A+T++++QG T+    L  S   F  G  YV  SRV
Sbjct: 837 RRQFPIQLSWAITVHEAQGLTLDKVVLTCSRE-FVFGLTYVGLSRV 881


>SB_17277| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 349 FPITLAFAMTINKSQGQTMSVCGLDLSTP 263
           FP   A+A+ I K+QGQT+  C + + +P
Sbjct: 86  FPFIPAYALPICKAQGQTLDTCIVWMDSP 114


>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1329

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 489 VPLLSRGGFKLRSKIIGDSTFNCKLCGGMPGKSSEFKNSVGKFTASVSSQTVSID 653
           V L   GG     ++ GD T      G +PG +  F+NS   +T S  +    I+
Sbjct: 289 VNLTLNGGMLTLDRLSGDRTDAAFESGALPGGNVSFENSSSSYTTSNEAGETQIE 343


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -1

Query: 370 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 197
           +   R  FP+  A A TI++SQG T S   ++  T        YV  SRV     L++
Sbjct: 132 VHVMRKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVTTIDGLYI 189


>SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)
          Length = 966

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 370 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 197
           +   R  FP+    A TI++SQG T S   ++  T      + YV  SRV     L++
Sbjct: 650 VHLMRKQFPLRPDAAKTIHRSQGDTESRIVVNFETKRAIPHKHYVGLSRVTTIDGLYI 707


>SB_11635| Best HMM Match : Borrelia_P13 (HMM E-Value=9.9)
          Length = 295

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 370 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 197
           +   R  FP+  A A TI++SQG T S   ++  T        Y+  SRV     L++
Sbjct: 132 VHVMRKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYIGLSRVTTIDGLYI 189


>SB_55122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -1

Query: 370 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 197
           +   R  FP+  A A TI++SQG T S   ++  T        YV  SRV     L++
Sbjct: 132 VHVMRKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVITIDGLYI 189


>SB_10124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -1

Query: 370 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 197
           +   R  FP+  A A TI++SQG T S   ++  T        YV  SRV     L++
Sbjct: 225 VHVMRKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVITIDGLYI 282


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 676  PGDLVSYKSIDTVCDDTEAVNFPTEFLNSLDLPGMPP 566
            P   VSY S +   +D +A     + L+S  +PG PP
Sbjct: 963  PQGAVSYASPEVQSEDQQASQQDQQVLSSYSVPGTPP 999


>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1246

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 706 ILNLKIHQLLPGDLVSYKSIDTV--CDDTEAVNFPTEFLNSLDLPGMPPHN 560
           +LN+K HQ +  D+ S+  +  V  C D E    P E +N  + P   PHN
Sbjct: 774 LLNMK-HQGISTDM-SHAEVQAVVECSDAETQTLPNEPMNPQNTPS-SPHN 821


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,805,468
Number of Sequences: 59808
Number of extensions: 448316
Number of successful extensions: 1108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)