Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0466
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g30560.1 68416.m03867 hypothetical protein 117 7e-27
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 117 9e-27
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 116 2e-26
At4g03916.1 68417.m00552 hypothetical protein low similarity to ... 115 3e-26
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 112 3e-25
At1g54430.1 68414.m06209 hypothetical protein 111 4e-25
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 110 8e-25
At3g30420.1 68416.m03847 hypothetical protein low similarity to ... 110 8e-25
At3g13250.1 68416.m01668 hypothetical protein low similarity to ... 109 2e-24
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 109 2e-24
At1g64410.1 68414.m07301 hypothetical protein 105 3e-23
At3g51700.1 68416.m05669 expressed protein 103 2e-22
At5g37110.1 68418.m04454 hypothetical protein 99 1e-21
At5g28780.1 68418.m03538 hypothetical protein various predicted ... 96 2e-20
At3g43350.1 68416.m04582 helicase-related low similarity to SP|Q... 89 3e-18
At5g32070.1 68418.m03689 hypothetical protein 87 1e-17
At4g03690.1 68417.m00504 hypothetical protein very low similarit... 86 2e-17
At3g51690.1 68416.m05668 hypothetical protein low similarity to ... 76 2e-14
At2g05080.1 68415.m00530 hypothetical protein low similarity to ... 38 0.007
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam... 30 1.8
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 30 1.8
At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 28 5.3
At4g17130.1 68417.m02579 hypothetical protein 28 7.1
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 9.3
At1g50870.1 68414.m05720 F-box family protein contains Pfam PF00... 27 9.3
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 117 bits (282), Expect = 7e-27
Identities = 73/176 (41%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
Frame = -1
Query: 679 LPGDLVSYKSIDTVC-DDTEAVNFPT---EFLNSLDLPGMPPHNLQLKVEXXXXXXXXXX 512
L G+ Y+S D++ DT A P +FLN + + G+P H L LKV
Sbjct: 1281 LTGEEKIYRSSDSIDPSDTRADKNPVYTPDFLNKIKISGLPNHLLWLKVGCPVMLLRNLD 1340
Query: 511 XXXXXN-GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPI 341
GTRL I ++ K+ +G IL G G+ ++IPR+P+ P+D +P + KR FP+
Sbjct: 1341 SHGGLMNGTRLQIVRLGDKLVQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPL 1400
Query: 340 TLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKDGLTK 173
++AFAMTINKSQGQ++ G+ L P FSHGQLYVA SRV L VL D K
Sbjct: 1401 SVAFAMTINKSQGQSLGNVGIYLPKPVFSHGQLYVAMSRVKSKGGLKVLITDSKGK 1456
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 117 bits (281), Expect = 9e-27
Identities = 72/168 (42%), Positives = 99/168 (58%), Gaps = 9/168 (5%)
Frame = -1
Query: 658 YKSIDTVCD-DTEAVNFPT---EFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXN 494
Y S D++ D++++N P +FLNS+ LPG+P H+L LKV N
Sbjct: 1492 YLSADSIDPTDSDSLNNPVITPDFLNSIKLPGLPNHSLCLKVGAPVMLLRNLDPKGGLCN 1551
Query: 493 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMT 320
GTRL I ++ ++ E ++ G G +LIP + + PTD + FK R FP+++AFAMT
Sbjct: 1552 GTRLQITQLCTQIVEAKVITGDRIGNIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAFAMT 1611
Query: 319 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV--GKPSSLFVLAKDG 182
INKSQGQ++ GL L P FSHGQLYVA SRV K + +L KDG
Sbjct: 1612 INKSQGQSLEHIGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDG 1659
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 116 bits (278), Expect = 2e-26
Identities = 70/172 (40%), Positives = 98/172 (56%), Gaps = 7/172 (4%)
Frame = -1
Query: 679 LPGDLVSYKSIDTVC-DDTEAVNFPT---EFLNSLDLPGMPPHNLQLKV-EXXXXXXXXX 515
L G+LV+Y S D++ D ++N P +FLNS+ L G+P HNL LK+
Sbjct: 905 LNGELVTYLSADSIDPQDAASLNNPVLTPDFLNSIKLSGLPNHNLTLKIGTPVMLLRNID 964
Query: 514 XXXXXXNGTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPI 341
NGTRL + ++ + E ++ G G+ ++I + I P+D +P + +R FPI
Sbjct: 965 PKGGLCNGTRLQVTQMGNHILEARVITGDRVGDKVIIIKSQISPSDTKLPFRMRRRQFPI 1024
Query: 340 TLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKD 185
+AFAMTINKSQGQ++ G+ L P FSHGQLYVA SRV L VL D
Sbjct: 1025 AVAFAMTINKSQGQSLKEVGIYLPKPVFSHGQLYVALSRVTSKKGLKVLIVD 1076
>At4g03916.1 68417.m00552 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 251
Score = 115 bits (277), Expect = 3e-26
Identities = 71/180 (39%), Positives = 100/180 (55%), Gaps = 7/180 (3%)
Frame = -1
Query: 703 LNLKIHQLLPGDLVSYKSIDTV--CDDTEAVN--FPTEFLNSLDLPGMPPHNLQLKV-EX 539
+N ++ + LPG+ + Y SID++ D T N F +FLNS+ + G+P H L+L +
Sbjct: 72 INQRLLEKLPGEEIQYLSIDSIDLSDTTSEYNPVFTPDFLNSIKISGLPNHCLRLNIGAP 131
Query: 538 XXXXXXXXXXXXXXNGTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQ 365
NGTRL + ++ + + I+ G G+ +LI +I I P+D +P
Sbjct: 132 IMLLRNLDPKGGLCNGTRLQMIQMTPPILQAVIITGGRIGDKVLISKILITPSDTKLPFN 191
Query: 364 FKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKD 185
+R FPI +AFAMTINKSQGQ++ GL L P FSH QLYVA SRV L VL D
Sbjct: 192 MRRKQFPIVVAFAMTINKSQGQSLKEIGLYLPRPVFSHDQLYVALSRVTSKKGLKVLIVD 251
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 112 bits (269), Expect = 3e-25
Identities = 73/167 (43%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Frame = -1
Query: 664 VSYKSIDTVCDDTEAVNFPT-EFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNG 491
+S SID D+ A T +FLNS+ L GMP H L+LKV NG
Sbjct: 1567 LSADSIDPTDSDSLANPVITPDFLNSIQLTGMPHHALRLKVGAPVMLLRNLDPKGGLCNG 1626
Query: 490 TRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMTI 317
TRL I ++ K+V + ++ G+ +LIP I + P+D + FK R FP+++AFAMTI
Sbjct: 1627 TRLQITQLAKQVVQAKVITRDRIGDIVLIPLINLTPSDTKLPFKMRRRQFPLSVAFAMTI 1686
Query: 316 NKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV--GKPSSLFVLAKDG 182
NKSQGQ++ GL L P FSHGQLYVA SRV K + +L KDG
Sbjct: 1687 NKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDG 1733
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 111 bits (267), Expect = 4e-25
Identities = 71/172 (41%), Positives = 95/172 (55%), Gaps = 10/172 (5%)
Frame = -1
Query: 679 LPGDLVSYKSIDTVCDD---TEA---VNFPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXX 518
+PG Y S D++ D TE +++P E+LNSL+ PG+P H L LKV
Sbjct: 1437 VPGLAKEYFSADSIDRDEALTEEGFEMSYPMEYLNSLEFPGLPAHRLCLKVGVPIMLLRN 1496
Query: 517 XXXXXXXN-GTRLVIKKIMKKVNEGTILNGKFRG-ENILIPRIPIIPTDV--PIQFKRIP 350
GTRL++ + KV + IL+ + + +LIPRI + P D P +R
Sbjct: 1497 LNQKEGLCNGTRLIVTHLGDKVLKAEILSDTTKERKKVLIPRIILSPQDSKHPFTLRRRQ 1556
Query: 349 FPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVL 194
FP+ + +AMTINKSQGQT++ L L P FSHGQLYVA SRV P L VL
Sbjct: 1557 FPVRMCYAMTINKSQGQTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTVL 1608
>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 1033
Score = 110 bits (265), Expect = 8e-25
Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 9/168 (5%)
Frame = -1
Query: 658 YKSIDTVCD-DTEAVNFPT---EFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN- 494
Y S D++ D+ ++N P +FLNS+ L G+P H+L+LKV
Sbjct: 847 YLSADSIDPTDSNSLNNPVITPDFLNSIKLAGLPNHSLRLKVSAPVMLLRNLDPKGGLCN 906
Query: 493 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMT 320
GTRL I ++ ++ E ++ G G +LIP + + PTD + FK R FP+++AFAMT
Sbjct: 907 GTRLQITQLCTQIVEAKVITGDIIGHIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAFAMT 966
Query: 319 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSL--FVLAKDG 182
IN SQGQ++ GL L FSHGQLYVA SRV L +L KDG
Sbjct: 967 INTSQGQSLEHVGLYLPKAVFSHGQLYVALSRVTSKKGLKFLILDKDG 1014
>At3g30420.1 68416.m03847 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 837
Score = 110 bits (265), Expect = 8e-25
Identities = 70/172 (40%), Positives = 94/172 (54%), Gaps = 10/172 (5%)
Frame = -1
Query: 679 LPGDLVSYKSIDTVCDD---TEA---VNFPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXX 518
+PG Y S D++ D TE +++P E+LNSL+ PG+P H L LKV
Sbjct: 635 VPGLAKEYFSADSIDQDEALTEEGFEMSYPMEYLNSLEFPGLPAHRLCLKVGVPIMLLRN 694
Query: 517 XXXXXXXN-GTRLVIKKIMKKVNEGTILNGKFRG-ENILIPRIPIIPTDV--PIQFKRIP 350
GTRL + + KV + IL+ + + +LIPRI + P D P +R
Sbjct: 695 LNQKEGLCNGTRLTVTHLGDKVLKAEILSDTTKKRKKVLIPRIILSPQDSKHPFTLRRRQ 754
Query: 349 FPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVL 194
FP+ + +AMT+NKSQGQT++ L L P FSHGQLYVA SRV P L VL
Sbjct: 755 FPVRMCYAMTVNKSQGQTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTVL 806
>At3g13250.1 68416.m01668 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1419
Score = 109 bits (262), Expect = 2e-24
Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Frame = -1
Query: 658 YKSIDTVC-DDTEAVNFPT---EFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXN 494
Y S D++ D++++ P +FLNS+ + GMP H+L+LKV N
Sbjct: 1234 YLSADSIDPSDSDSLKNPVITPDFLNSIKVSGMPHHSLRLKVGAPVMLLRNLDPKGGLCN 1293
Query: 493 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMT 320
GTRL I ++ + E ++ G G+ + IP I I P+D + FK R FP+++AF MT
Sbjct: 1294 GTRLQITQLCSHIVEAKVITGDRIGQIVYIPLINITPSDTKLPFKMRRRQFPLSVAFVMT 1353
Query: 319 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKD 185
INKSQGQ++ GL L P FSHGQLYVA SRV + L +L D
Sbjct: 1354 INKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKILILD 1398
>At1g52960.1 68414.m05990 hypothetical protein very low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 109 bits (262), Expect = 2e-24
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 7/168 (4%)
Frame = -1
Query: 703 LNLKIHQLLPGDLVSYKSIDTVCD-DTEAVN---FPTEFLNSLDLPGMPPHNLQLKVEXX 536
+N + +L G+ Y S D++ DT + N + +FLNS+ + G+P H L+LKV
Sbjct: 820 INEHMMSMLDGEERIYLSSDSIDPADTSSANNDAYSADFLNSVRVSGLPNHCLRLKVGCP 879
Query: 535 XXXXXXXXXXXXXN-GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQ 365
GTRL + ++ V + + G G+ +LIPR+ I P+D +P +
Sbjct: 880 VMLLRNMDPNKGLCNGTRLQVTQMADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFK 939
Query: 364 FKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV 221
+R FP+++AFAMTINKSQGQT+ GL L P FSHGQLYVA SRV
Sbjct: 940 MRRRQFPLSVAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRV 987
>At1g64410.1 68414.m07301 hypothetical protein
Length = 1231
Score = 105 bits (252), Expect = 3e-23
Identities = 61/143 (42%), Positives = 84/143 (58%), Gaps = 6/143 (4%)
Frame = -1
Query: 631 DTEAVN---FPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN-GTRLVIKKIM 464
DT + N + +FLNS+ + G+P H L+LKV GTRL + ++
Sbjct: 1061 DTSSANNDAYSADFLNSVRVSGLPNHCLRLKVGCPIMLLRNMDPNKGLCNGTRLQVTQMA 1120
Query: 463 KKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMTINKSQGQTMS 290
V + + G G+ +LIPR+ I P+D +P + +R FP+++AFAMTINKSQGQT+
Sbjct: 1121 DTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKMRRRQFPLSVAFAMTINKSQGQTLE 1180
Query: 289 VCGLDLSTPCFSHGQLYVACSRV 221
GL L P FSHGQLYVA SRV
Sbjct: 1181 SVGLYLPRPVFSHGQLYVAISRV 1203
>At3g51700.1 68416.m05669 expressed protein
Length = 344
Score = 103 bits (246), Expect = 2e-22
Identities = 67/160 (41%), Positives = 86/160 (53%), Gaps = 10/160 (6%)
Frame = -1
Query: 613 FPTEFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNEGTIL 437
+P EFLNS+ +PG P L+LKV GTRL I ++ V E I+
Sbjct: 168 YPLEFLNSIKIPGFPDFKLRLKVGAPVMLLRDLAPYGWLRKGTRLQITRVETFVLEAMII 227
Query: 436 NGKFRGENILIPRIP--IIPTDVPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTP 263
G GE +LIPRIP + PI+ +R FP+ LAFAMTI++SQ QT+S G+ L
Sbjct: 228 TGNNHGEKVLIPRIPSDLREAKFPIKMRRRQFPVKLAFAMTIDESQRQTLSKVGIYLPRQ 287
Query: 262 CFSHGQLYVACSRVGKPSSLFVLA--KDGL-----TKNIV 164
HGQ YVA S+V + L VL KDG TKN+V
Sbjct: 288 LLFHGQRYVAISKVKSRAGLKVLITDKDGKPDQEETKNVV 327
>At5g37110.1 68418.m04454 hypothetical protein
Length = 1307
Score = 99 bits (238), Expect = 1e-21
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Frame = -1
Query: 604 EFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN-GTRLVIKKIMKKVNEGTILNGK 428
+FLNS+ + +P H L+LK+ GTRL I ++ + + IL G
Sbjct: 1154 DFLNSVKVSRLPNHKLRLKIGCPVMLLRNIDPIGGLMNGTRLRITQMGPFILQAMILTGD 1213
Query: 427 FRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFS 254
G +LIPR+ + P+D +P + +R P+ + FAMTINKSQGQ++ G+ L PCFS
Sbjct: 1214 RAGHLVLIPRLKLAPSDTKLPFRMRRTQLPLAVCFAMTINKSQGQSLKRVGIFLLRPCFS 1273
Query: 253 HGQLYVACSRVGKPSSL 203
HGQLYVA SRV + L
Sbjct: 1274 HGQLYVAISRVTSKTRL 1290
>At5g28780.1 68418.m03538 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 337
Score = 96.3 bits (229), Expect = 2e-20
Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Frame = -1
Query: 646 DTVCDDTEAVNFPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN-GTRLVIKK 470
DT+ D EA+ + ++LNSL+ P +P H + LK GTRL++
Sbjct: 156 DTIGADYEAL-YHVKYLNSLEFPSLPKHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTN 214
Query: 469 IMKKVNEGTILNGKFRGENILIPRIPIIP--TDVPIQFKRIPFPITLAFAMTINKSQGQT 296
+ ++V E I+ G G+ + IPR + P ++ P +R FP+ + +AMTI K+QGQ+
Sbjct: 215 LGEQVIEAQIVTGTHAGKMVSIPRFILSPPQSEHPFTLRRQQFPMRVCYAMTIIKNQGQS 274
Query: 295 MSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVL----AKDGLTKNIVHAAALKD 143
+ L L P FSH QLYVA SRV P L +L K+ KNIV+ D
Sbjct: 275 LKSDVLYLPNPVFSHVQLYVALSRVTSPIGLTILHGDDQKNDEVKNIVYKEFYND 329
>At3g43350.1 68416.m04582 helicase-related low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 830
Score = 89.0 bits (211), Expect = 3e-18
Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Frame = -1
Query: 493 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMT 320
GTRL + ++ V + + G G+ +LIPR+ I P+D +P + +R F +++AFAMT
Sbjct: 613 GTRLQVTQMADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKMRRKQFALSVAFAMT 672
Query: 319 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV 221
INKSQGQT+ GL L P FSHGQLYVA SRV
Sbjct: 673 INKSQGQTLESVGLYLPRPVFSHGQLYVAISRV 705
Score = 88.2 bits (209), Expect = 5e-18
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Frame = -1
Query: 493 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMT 320
GTRL + ++ V + + G G+ +LIPR+ I P D +P + +R F +++AFAMT
Sbjct: 729 GTRLQVTQMADTVIQARFITGNRVGKIVLIPRMLITPLDTRLPFKMRRKQFALSVAFAMT 788
Query: 319 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV 221
INKSQGQT+ GL L P FSHGQLYVA SRV
Sbjct: 789 INKSQGQTLESVGLYLPRPVFSHGQLYVAISRV 821
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/38 (76%), Positives = 30/38 (78%)
Frame = -1
Query: 334 AFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV 221
AFAMTINKSQGQT+ GL L P FSHGQLYVA SRV
Sbjct: 552 AFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRV 589
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Frame = -1
Query: 703 LNLKIHQLLPGDLVSYKSIDTV--CDDTEAVN--FPTEFLNSLDLPGMPPHNLQLKV 545
+N + ++L G+ Y S D++ D + A N + +FLN++ + G+P H L+LKV
Sbjct: 457 INEHMMRMLDGEERIYLSSDSIDPADISSANNAAYLADFLNNVRVYGLPNHCLRLKV 513
>At5g32070.1 68418.m03689 hypothetical protein
Length = 339
Score = 86.6 bits (205), Expect = 1e-17
Identities = 65/166 (39%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Frame = -1
Query: 664 VSYKSIDTVCDDTEAVNFPT-EFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXNGT 488
+S SID D+ A + T +FLNS+ L G+ H L LKV G
Sbjct: 163 LSADSIDPTDSDSLANSVITPDFLNSIKLSGLAHHALCLKV-----------------GA 205
Query: 487 RLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMTIN 314
++ K+V + ++ G GE +LIP I + P+D+ + FK R F +++AFA+TIN
Sbjct: 206 PATKTQLTKQVVQVRVITGDRIGEIVLIPLINLTPSDMKLPFKMRRRQFSLSVAFAITIN 265
Query: 313 KSQGQTMSVCGLDLSTPCFSHGQLYVACSRV--GKPSSLFVLAKDG 182
KSQGQ++ GL L P FS GQLYVA SRV K + +L KDG
Sbjct: 266 KSQGQSLEQVGLYLPKPVFSLGQLYVALSRVTSKKGLKILILDKDG 311
>At4g03690.1 68417.m00504 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 570
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Frame = -1
Query: 493 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMT 320
GTRL I ++ K+ +G L G G+ +LI +P+ P+ +P + +R FP+++AFAM
Sbjct: 444 GTRLQIVRLGDKLVQGRPLTGTRVGKLVLILMMPLTPSAHRLPFKMRRKQFPLSVAFAMM 503
Query: 319 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKDGLTK 173
INKSQ Q+++ G++L P FSHGQLYVA SRV + L VL D K
Sbjct: 504 INKSQRQSLANVGINLLKPVFSHGQLYVAMSRVKSKARLKVLITDSKGK 552
>At3g51690.1 68416.m05668 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 374
Score = 76.2 bits (179), Expect = 2e-14
Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Frame = -1
Query: 682 LLPGDLVSYKSIDTVCDDTEAVNF-PTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXX 506
LLPG+ S D++ F P E LNS+ +PG+P L+LKV
Sbjct: 140 LLPGEEKECLSTDSISPSPNDDMFVPLEVLNSIKVPGLPDFKLRLKV------------- 186
Query: 505 XXXNGTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDV--PIQFKRIPFPITLA 332
G +++ + + G G+ I IPRI PT+ P+Q +R +P+ LA
Sbjct: 187 ----GAPVMLLRDLDPSR------GNKHGKKIWIPRIASYPTETNFPLQMRRTQYPLKLA 236
Query: 331 FAMTINKSQGQTMSVCGLDLSTPCFSHG-QLYVACSRVGKPSSLFVLAKD 185
FAMTI++SQ T+S GL L FSHG Q++VA S+V + L VL D
Sbjct: 237 FAMTIDESQVHTLSKVGLYLPRQVFSHGRQMFVAISKVKSRAGLKVLITD 286
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = -1
Query: 349 FPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV--GKPSSLFVLAKD 185
+P TLAFAMTI++S+GQT S GL L F GQ Y+A S+V G + F++A++
Sbjct: 298 YPFTLAFAMTIDQSRGQTFSKVGLYLPKQVFFPGQRYLAISKVKAGTGLTQFLIAEE 354
>At2g05080.1 68415.m00530 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 1238
Score = 37.9 bits (84), Expect = 0.007
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Frame = -1
Query: 679 LPGDLVSYKSIDTV-CDDTEAVNFPT---EFLNSLDLPGMPPHNLQLKV-EXXXXXXXXX 515
L G+ +++ S D++ D + N P EFLN++ + G+ H L+LK+
Sbjct: 1138 LQGEELTFLSSDSLDTADIGSRNNPVLTPEFLNNVKVLGLSNHKLRLKIGSPVMLLRNID 1197
Query: 514 XXXXXXNGTRLVIKKIMKKVNEGTILNGKFRGENILIPRI 395
NGTRL I ++ + + IL G G+ +LIPR+
Sbjct: 1198 PIGGLMNGTRLQIMQMSPFILQAMILTGDRAGQLVLIPRL 1237
>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 669
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 372 GTSVG--IIGIRGINIFSPRNLPFKMVPSLTFFIIFLMTNRVPLLSRGGFKLRS 527
G S G +I RG N++ P P K++P FI+ M +V + G +RS
Sbjct: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPK---FILLAMRGQVLPIHGDGSNVRS 224
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 372 GTSVG--IIGIRGINIFSPRNLPFKMVPSLTFFIIFLMTNRVPLLSRGGFKLRS 527
G S G +I RG N++ P P KM+P FI+ M+ + + G +RS
Sbjct: 176 GRSYGLPVITTRGNNVYGPNQFPEKMIPK---FILLAMSGKPLPIHGDGSNVRS 226
>At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 296
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 284 TNRHCLALGFINSHCKC-QCNRKWNTLKLNWHICGYNRYSWY 406
T R A+ + H C C RKW++ K N +C SW+
Sbjct: 47 TERRSAAVITVCKHGYCLACIRKWSSFKRNCPLCNTRFDSWF 88
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 372 GTSVG--IIGIRGINIFSPRNLPFKMVPSLTFFIIFLMTNRVPLLSRGGFKLRS 527
G S G +I RG N++ P P K++P FI+ M + + G +RS
Sbjct: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPK---FILLAMNGKPLPIHGDGSNVRS 224
>At4g17130.1 68417.m02579 hypothetical protein
Length = 747
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 259 FSHGQLYVACSRVGKPSSLFVLAKDGLTKNIVHAAALKD 143
F +GQ+ +C +G SS V +DG+ + H A +D
Sbjct: 338 FKNGQVLDSCISLGACSSYSVSREDGVELEVYHKAPQQD 376
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -1
Query: 493 GTRLVIKKIMKKVNEGTILNGK---FRGENILIPRIPIIP-TDVP 371
GT+ +KKI+K+V + + +GK +GE +P IP T VP
Sbjct: 745 GTKKTVKKIIKRVVKRPVNDGKATGMKGEKSDVPEHVAIPETTVP 789
>At1g50870.1 68414.m05720 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to Probable
disease resistance RPP8-like protein 2
(Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
Length = 396
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 48 TFPHRSQRSRPFHSYS 1
TFPH +Q S+ HSYS
Sbjct: 95 TFPHHNQNSKETHSYS 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213,780
Number of Sequences: 28952
Number of extensions: 314167
Number of successful extensions: 801
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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