Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0464
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    26   3.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   3.0  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    25   9.0  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 139 FTARCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTAASLDTNAPD 5
           F++  Y F  +    +    +FI   GT+   +  AA+LD + PD
Sbjct: 201 FSSHTYKFVNDKGEFYYCKWHFITNQGTKGLTNEEAAALDGSNPD 245


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 26  RCSGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCSKNQTRKIIISVITGGRTSC 193
           RCS + I   G+ F N I +   F+   HG+GI   + + +R ++  +      SC
Sbjct: 220 RCSKINI--TGSVFDNFIPS--FFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSC 271


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 171 ITEIIILRV*FLLHDVIPSPWKSIVNI 91
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 386 AHSPPGVKWLLEPIDIYNVNAPHTLR 309
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 336 VDVYGLQ*PLNTRWAVSSSTHLSNXXXXXXTRGGARYPIRPIVSRITIHWPS 491
           +DV+  + P N +W+ S + ++        T+  A   ++    R+ I  PS
Sbjct: 74  IDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPS 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,432
Number of Sequences: 5004
Number of extensions: 41629
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)