Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0464
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    31   0.42 
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    30   1.3  
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743...    27   6.9  
01_06_1749 - 39636951-39638102                                         27   9.1  

>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 53  AGTNFSNEIRTQQMFTIDFHGEGITSC-SKNQTRKIIISVITGGRTSCESARVGTTAPPI 229
           +GT+   +    ++  +D  G GIT+C  +N+ +K   S++ G      + RV      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 230 SAV 238
           +AV
Sbjct: 89  NAV 91


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 20  IERCSGVRIPQAGTNFSNEIRTQQMFTIDFHGE 118
           I RC+GV I   G N   +I T      DFHGE
Sbjct: 157 ISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>03_02_0320 +
           7437528-7437623,7437725-7437772,7438885-7438994,
           7439651-7439735,7439839-7440115,7440296-7440454,
           7440563-7440666,7440930-7441168,7441265-7441583,
           7441665-7442069,7442157-7442294,7442376-7442555
          Length = 719

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +2

Query: 23  ERCSGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCSKNQTRKIIISVITGGRTSCESA 202
           E+C  V   Q G    +++ T Q+F +D  G    + S+ +    +  +  G   +  S 
Sbjct: 454 EQCIDVLPSQFGRQNQDQVTTNQVFEVD-QGMDCAAVSEGEWADTLTDISVGYLLTEASR 512

Query: 203 RVGTTAPPISAVK 241
              T  P  S VK
Sbjct: 513 GANTDCPGTSVVK 525


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 290 SIVTTAAPPFKPKRITA 240
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,471
Number of Sequences: 37544
Number of extensions: 317348
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)