Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0459
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66850.1 68418.m08428 protein kinase family protein contains ... 32 0.34
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 30 1.1
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 28 4.2
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 4.2
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 28 5.6
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 5.6
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 5.6
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 27 7.4
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 7.4
At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical ... 27 7.4
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 27 7.4
At1g62510.1 68414.m07053 protease inhibitor/seed storage/lipid t... 27 9.8
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 31.9 bits (69), Expect = 0.34
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 248 PQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDC 409
PQ R+ R + P R + PL + PR+S SP PR T RDC
Sbjct: 253 PQPRSPRKQIRSPQPSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDVTNGRRDC 306
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 30.3 bits (65), Expect = 1.1
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +2
Query: 290 PRRKAHPLPGRKENPLPRES----ARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 457
PRR L R+ +PLPR RSP P + P R R PSR G
Sbjct: 212 PRRPRERLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSR--G 269
Query: 458 ALPSTCPSRQTR-PRQG 505
PS+ P R+ R P +G
Sbjct: 270 RSPSSPPPRRYRSPPRG 286
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 287 LPRRKAHPLPGRKENPLPRESARSPTLP 370
+P K P+P K P+P S SP++P
Sbjct: 39 VPSPKPKPVPSPKPKPVPSPSVPSPSVP 66
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -1
Query: 368 VGLGNVHFHGVGDFLFYRVGDVLFDGVGN 282
VG+G+V GVGD VGDV DGVG+
Sbjct: 194 VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 424 TYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQNLTPLKRK 540
T R+ + K+ TQ + ++ SP R + ++LTP RK
Sbjct: 127 TIRSSSVPKKTTTTQIQASASVSSPKRTVSRSLTPSSRK 165
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 308 PLPGRKENPLPRESARSPTLPRCQT---CPLPS*RDCQGTSSRTATLPSRKEGALPSTCP 478
P +P PR +RSP+ R ++ PLPS Q S++ + PS + + + P
Sbjct: 245 PAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPS---VQKEGSKSPSKPSPAKSPIHTRSP 301
Query: 479 SR 484
SR
Sbjct: 302 SR 303
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 308 PLPGRKENPLPRESARSPTLPRCQT---CPLPS*RDCQGTSSRTATLPSRKEGALPSTCP 478
P +P PR +RSP+ R ++ PLPS Q S++ + PS + + + P
Sbjct: 245 PAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPS---VQKEGSKSPSKPSPAKSPIHTRSP 301
Query: 479 SR 484
SR
Sbjct: 302 SR 303
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 358 PNPTPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQN 519
P+ + S TQ + S+ Q ++ +QS+ + +Q SQS SPS+ Q+
Sbjct: 765 PSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQS 818
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.5 bits (58), Expect = 7.4
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 293 RRKAHPLPGRKENPLPRESARSPTLP-RCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 469
RR H GR+++P P RSP+ P R + P P R R+ + P+R+ +
Sbjct: 293 RRPTHE--GRRQSPAPSRRRRSPSPPARRRRSPSPPAR-----RRRSPSPPARRHRS--P 343
Query: 470 TCPSRQTR 493
T P+RQ R
Sbjct: 344 TPPARQRR 351
>At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical to
plastid heme oxygenase (HY1) [Arabidopsis thaliana]
GI:4877362, heme oxygenase 1 [Arabidopsis thaliana]
GI:4530591 GB:AF132475; annotation updated per Seth J.
Davis at University of Wisconsin-Madison
Length = 282
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 376 SNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPS 501
S++S+ + +LSR+QF+ +P R Q +S + + SPS
Sbjct: 9 SSLSIFKNPQLSRFQFSSSSPNPLFLRPRIQILSMTMNKSPS 50
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 457 CLTQYMSQSTDPSPSRYMCQNLTPLKRKFMFQSKCTCPLLTQ*RK 591
CL+ STDPSP++ C +K + KC C L R+
Sbjct: 55 CLSFLTVGSTDPSPTKTCC---VGVKTVLNYSPKCLCSALESSRE 96
>At1g62510.1 68414.m07053 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 149
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 290 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCP 388
P+ K P P K NP P+ + P CP
Sbjct: 36 PKHKPSPSPKPKPNPKPKPTPHPSPSPAIAKCP 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,254,169
Number of Sequences: 28952
Number of extensions: 186969
Number of successful extensions: 589
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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