Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0458
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.2  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   2.0  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   3.6  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   4.7  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   4.7  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   8.3  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    25   8.3  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   8.3  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 57   AIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIY 191
            ++P +    PN+    P+    P A   F + L+  F+  GG++Y
Sbjct: 2299 SLPVSDRVFPNLGAWNPSEGPGPCASPCFYIALICQFVAVGGLLY 2343


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 48  GLFAIPFTVLEIPNIK--IKKPTWLQAPSAMTTFSLVLLSYFLVT 176
           G+ A+ F     PN +  ++K  +  +PS +T+F L L SY   T
Sbjct: 24  GVLALDFVAKTFPNQENQLEKRDYTYSPSGITSFPLDLQSYTYYT 68


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 378 PKLNRILLISVAFLCILVSFFTTWI 452
           P +  +L + ++ L ++V FFT W+
Sbjct: 81  PNIYSLLRLLISVLAVIVVFFTAWV 105


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 405 SVAFLCILVSFFTTWIFMRMKLPGYLQN*FVS 500
           S+ F  IL+   T  +    KLPGYL+N F S
Sbjct: 291 SIYFSTILLREETKSLISPKKLPGYLENLFKS 322


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 347 NTRPHTQPDHTKTESNSPYLCGVPMYFSVILYHLDIHAYEVARIF 481
           +T+    P H  + S  P+   V ++F+ +   L +H Y+ + +F
Sbjct: 8   STKFQGHPYHIVSASPWPFFLSVVLFFNCLAATLYLHGYKHSSVF 52


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 326 TRRAWLHNTRP-HTQPDHTKTESNSPYLCGVPMYFSVI 436
           T +   +NT P + QP+ TK  +NSP     P+Y +V+
Sbjct: 148 TNQQQQNNTNPINNQPEDTKPNTNSP-----PVYHTVL 180


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 189 YDVIVEPPSVGSTTDEHGHSRPVAFMPNRVNG 284
           Y V+V  P+  S   E    +PV F+ NR+NG
Sbjct: 144 YGVVVHYPNSESLI-ERFVEKPVEFVSNRING 174


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 395 SPYLCGVPMYFSVILYHLDI 454
           +P  CG P YF VI + +D+
Sbjct: 421 NPTACGCPDYFKVIKHPMDL 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,440
Number of Sequences: 5004
Number of extensions: 55272
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)