Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0458
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29870.1 68417.m04251 expressed protein predicted protein, Ar...   120   7e-28
At2g19340.2 68415.m06035 membrane protein, putative contains 3 t...   114   4e-26
At2g19340.1 68415.m06034 membrane protein, putative contains 3 t...    99   3e-21
At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1...    29   3.1  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    27   7.1  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    27   7.1  
At1g16720.1 68414.m02005 expressed protein                             27   9.4  

>At4g29870.1 68417.m04251 expressed protein predicted protein,
           Arabidopsis thaliana, PIR2:T01282
          Length = 172

 Score =  120 bits (289), Expect = 7e-28
 Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
 Frame = +3

Query: 60  IPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTDE- 236
           IPF+ L  P +++K P++   PS MT FSL+LL+YFLV  G +YDVIVEPP +GST D  
Sbjct: 31  IPFSFLRPPRLRLKLPSFT-LPSPMTVFSLILLTYFLVVSGFVYDVIVEPPGIGSTQDPI 89

Query: 237 HGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILDRTHNPTTPKLNRILLISVAF 416
            G  RPV FM  RVNGQYI+EGL+            I+LD   +    K  +    +   
Sbjct: 90  TGSVRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIIMLDLALDKNRAKSVKASYATAGV 149

Query: 417 LCILVSFFTTWIFMRMKLPGYLQ 485
             I++++  + +F+R+K+PGYL+
Sbjct: 150 SSIVIAYVMSMLFIRIKIPGYLR 172


>At2g19340.2 68415.m06035 membrane protein, putative contains 3
           transmembrane domains;
          Length = 173

 Score =  114 bits (275), Expect = 4e-26
 Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
 Frame = +3

Query: 60  IPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTD-E 236
           +PF+ L  P +++K P++   PS MT ++L+LL+YFLV  G +YDVIVEPP +GST D  
Sbjct: 32  VPFSFLRPPRLRLKIPSFT-LPSPMTVYALILLTYFLVVSGFVYDVIVEPPGIGSTQDPT 90

Query: 237 HGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILDRTHNPTTPKLNRILLISVAF 416
            G  RPV FM  RVNGQYI+EGL+            ++LD   +    K  +        
Sbjct: 91  TGTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLDLALDKNKAKSVKASYAVAGV 150

Query: 417 LCILVSFFTTWIFMRMKLPGYL 482
             I++++  + +F+R+K+PGYL
Sbjct: 151 SSIVIAYVMSMLFIRIKIPGYL 172


>At2g19340.1 68415.m06034 membrane protein, putative contains 3
           transmembrane domains;
          Length = 200

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
 Frame = +3

Query: 60  IPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTD-E 236
           +PF+ L  P +++K P++   PS MT ++L+LL+YFLV  G +YDVIVEPP +GST D  
Sbjct: 32  VPFSFLRPPRLRLKIPSFT-LPSPMTVYALILLTYFLVVSGFVYDVIVEPPGIGSTQDPT 90

Query: 237 HGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILD 356
            G  RPV FM  RVNGQYI+EGL+            ++LD
Sbjct: 91  TGTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLD 130


>At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1.4)
           plant glutamate receptor family, PMID:11379626
          Length = 861

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 54  FAIPFTVLEIPNIKIK-KPTWLQAPSAMTTFSLVLLSYFLVTGGIIY 191
           F +PFT + +  +  K K  W+       +  L + S+F++TG I++
Sbjct: 541 FTLPFTDMGLAVVTAKDKSMWIIFKPLTLSLWLTIASFFILTGAIVW 587


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 344 HNTRPHTQPDHTKTESNSPYLCGVP 418
           H   PHT P HT T    P  CG P
Sbjct: 87  HTPTPHT-PSHTPTPHTPPCNCGSP 110


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 344 HNTRPHTQPDHTKTESNSPYLCGVP 418
           H   PHT P HT T    P  CG P
Sbjct: 87  HTPTPHT-PSHTPTPHTPPCNCGSP 110


>At1g16720.1 68414.m02005 expressed protein
          Length = 598

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 355 SSIMKPSPPSEKRKLDARP 299
           SS   PSPPS+K+K   RP
Sbjct: 49  SSSPSPSPPSDKKKTKTRP 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,364,872
Number of Sequences: 28952
Number of extensions: 282829
Number of successful extensions: 632
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)