Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0457
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    30   0.19 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    27   2.3  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    27   2.3  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    27   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   5.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   7.2  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   7.2  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   7.2  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   7.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.5  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 281 GSPQNRNCR*ESSCSLPRRKAHSLPGRKKNTL-PRESARSPTLPRCQTCSLPT*RDCQGT 457
           GS   +    E +    + K  ++ G+KKN+L P E  +  T    QT S PT +   G 
Sbjct: 2   GSKGKKGKSSEVNLETSKNKEKNIKGKKKNSLDPIEKNKQET-AGLQTTSRPTAKQLVGG 60

Query: 458 SSRTATLP 481
           SS T  +P
Sbjct: 61  SSWTGKIP 68


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
 Frame = +3

Query: 372  PYPVKVHVPQ-PYPVVKHVPYPLKEIVKGPVHVPQ---PYPVEKKGAYPVHVPVDRP 530
            P P    +P  P P V   P P   +   PV  P    P P     A PV VP   P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +2

Query: 329 PRRKAHSLP----GRKKNTLPRESARSPTLPRCQTCSLPT*RDCQGTSSRTATLPSRKKR 496
           PR+++ S P     +K+   P  S   P LP+ +  S+P       T+S     PS  K 
Sbjct: 315 PRKRSPSSPVPLLAKKREGSP--SLPIPILPKMKDTSIPAAEPASSTTSARDQTPSTPKD 372

Query: 497 -GLPSTCSS 520
            G PST  +
Sbjct: 373 VGSPSTAET 381


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 344 HSLPGRKKNTLPRESARSPTLP-RCQTCSL 430
           HS+P R     PR  A+  TLP  C +CSL
Sbjct: 301 HSIPSRGGFHCPRCKAKVCTLPIECPSCSL 330


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
 Frame = +2

Query: 314 SSCSLPRRKAHSL-PGRKKNTL-----PRESARSPTLPRCQTCSLPT*RDCQGTSSRTAT 475
           +S   P+++   L P +KK TL     P  S  + T+    T  +PT    Q  +  T  
Sbjct: 80  ASYEKPKKEHPKLRPSKKKATLDDWDIPTSSTETDTISTTHTSYIPTLLAKQEENEETKE 139

Query: 476 LPSRKKRGLPSTCSSR 523
             + K   LP T   R
Sbjct: 140 TTTNKNESLPGTSLKR 155


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/49 (38%), Positives = 20/49 (40%)
 Frame = +3

Query: 372 PYPVKVHVPQPYPVVKHVPYPLKEIVKGPVHVPQPYPVEKKGAYPVHVP 518
           P P  V VP P P    VP P   I+ GP   P P  V   G  P   P
Sbjct: 734 PPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = +3

Query: 372 PYPVKVHVPQPYPVVKHVPYPLKE---IVKGPVHVPQPYPVEKKGAYPVHVPVDRPVP 536
           P P  + VP P P++   P P         GP   P P P    G    + P  +  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 458 SSRTATLPSRKKRGLPSTCS 517
           +S T TLP+ K RG+P  C+
Sbjct: 369 NSLTKTLPNWKTRGIPEYCA 388


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +2

Query: 365 KNTLPRESARSPTLPRCQTCSLPT*RDCQGTSSRTATLPSRKKRGLPSTCSS 520
           K   PRES   P L      S    +    TSS +   PSR     P++ SS
Sbjct: 215 KPPFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSS 266


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 323 SLPRRKAHSLPGRKKNTLPRESARSP 400
           S P+   H+   R+KN +PR+S+  P
Sbjct: 175 SSPQSSYHTPTKRRKNAVPRKSSSPP 200


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 400 NPTPLSNMFLTHLKRLSRDQFTYRNPTQSKKKGLTQYMFQSTDPS 534
           NP+P SN     L+  S++Q  Y   TQ   KGL     + T+P+
Sbjct: 384 NPSP-SNWNNRLLQPSSKEQAVYSFQTQKNSKGLQFTSNELTNPT 427


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 19  NLLVQHHEDQCSWPPVWWL 75
           N+++ +H+    W  VWWL
Sbjct: 96  NIVIANHQLYSDWMYVWWL 114


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 423 VPYPLKEIVKGPVHVPQPYPVEKKGAYPVHV--PVDRPVP 536
           +P  L    + P+ +P PYPV+     PV +  P+  P P
Sbjct: 155 IPPILNSSDRSPLSLPTPYPVQ-YSTQPVSLPQPIAAPAP 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,192
Number of Sequences: 5004
Number of extensions: 30267
Number of successful extensions: 113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)