Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0456
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    33   0.20 
01_05_0539 + 23031976-23032216,23032896-23033341                       28   7.4  

>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 561  SRYY*ITLHDRPCQLLNALVIDNVVPGVDRV-W*HRSTVGISR-IPGWRLVLPFLQKLFS 734
            SR Y +  H     L NA+  DN V  + ++   HR  +  S+ +P W   LP    L  
Sbjct: 905  SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPIKNDLIE 964

Query: 735  DLLLNDNQVSFLNK 776
              ++++   + L K
Sbjct: 965  AKIVHEQLCTMLEK 978


>01_05_0539 + 23031976-23032216,23032896-23033341
          Length = 228

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 789 KSYFIYLKKKLDYR*AINPRRVFEEMATLSATRGSGKYRPLTDVTRPDR 643
           + Y   L KK+ Y    N R +   + T+  +R  G YR   D+TR +R
Sbjct: 70  REYSPKLLKKIGYH-LYNCRELTIPLQTIEESRAGGAYRETHDMTRNER 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,149
Number of Sequences: 37544
Number of extensions: 217136
Number of successful extensions: 618
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)