Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0455
         (328 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   1.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   2.5  
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      20   5.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   5.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 293 PLEHGPPRMGLPRPQLTFGETRYAPSTKLAAP 198
           PL    PR+G P+    +G    + S + +AP
Sbjct: 68  PLHPSVPRLGHPQWPFAWGSLXRSSSPQTSAP 99


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 184 LPTIGGAASFVLGA*RVSPKVSCGRGRPI--LGGPCSRGGPVPNSPY 318
           +P  GGA     G+    P V   +G P    GGP S G P    PY
Sbjct: 36  VPQGGGAVQPDPGS--CDPSVGLRQGIPPHHYGGPPSGGQPPQGMPY 80


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +3

Query: 147 GTSPWELEAESLAADYRWRSE 209
           G S W++       D +WR E
Sbjct: 1   GWSLWKVRGRCEGKDSKWRGE 21


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +2

Query: 215 CSGRSASPRK*AAGAEGPFSAVRARGGAR 301
           C G   + R  A        A  ARG AR
Sbjct: 267 CGGEEEAERAPAPAVRAAGDAAAARGAAR 295


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,209
Number of Sequences: 336
Number of extensions: 1387
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)