Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0455
(328 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 31 0.058
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 23 2.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 2.2
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 2.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 2.9
SPBC1683.10c |pcl1||ferrous iron transporter Pcl1|Schizosaccharo... 25 2.9
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 24 5.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 5.1
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 24 5.1
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 24 6.7
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 24 6.7
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 6.7
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 8.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 23 8.8
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 23 8.8
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 30.7 bits (66), Expect = 0.058
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 325 THYRANWVPGPPSSTDRREW 266
T+Y +NW P PP TDR W
Sbjct: 491 TYYMSNWEP-PPKETDRNRW 509
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 22.6 bits (46), Expect(2) = 2.2
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -3
Query: 95 PDGNGA-LRPAQEPSHSGPVARLSP 24
P +G + P Q+PSH P ++P
Sbjct: 938 PTASGTRVPPVQQPSHPNPYTPVAP 962
Score = 21.0 bits (42), Expect(2) = 2.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 263 LPRPQLTFGETRYAPSTKLAAPPIVG 186
LP P T T AP+ PP VG
Sbjct: 907 LPPPPPTASMTASAPAIASPPPPKVG 932
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 75 QRTVAIRVIRGYRTVSFEAACVLAG 149
+R A+ VIR + V+ ++CV+AG
Sbjct: 1140 ERVTAVTVIRCTQIVALSSSCVMAG 1164
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 2.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 126 EAACVLAGTSPWELEAESLAADYRWRSELRAR--GVARLPESELR 254
EAA AG S WE+E E + + + ++ + + PESE R
Sbjct: 214 EAAAAKAGKSEWEIEFEKFKLEQKKQPDVASSDGDFSDEPESEER 258
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 2.9
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -3
Query: 296 PPLEHGPPRMGLPRPQLTFGETRYAPSTKLAAPPIVGS 183
P E PP PRP + AP APPI S
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSS 170
>SPBC1683.10c |pcl1||ferrous iron transporter
Pcl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 25.0 bits (52), Expect = 2.9
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 159 WELEAESLAADYRWR--SELRARGVARLPESELRARKAHSR 275
W+ E + LAA YR R E +R VA + E A +AH+R
Sbjct: 97 WDAEVDELAAIYRGRGLDEELSRTVA-VQLMEYNALEAHAR 136
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -3
Query: 296 PPLEHGPPRMGLPRPQLTFGETRYAPSTKLAAPPI 192
PP ++ PP P + + +T Y P + PP+
Sbjct: 210 PPQQNYPPAASSSAPPMQYQQTAYPPQ-QAPYPPV 243
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 241 KVSCGRGRPILGGPCSRGGPVPNSPY 318
++ C GR L P + G P+P+ PY
Sbjct: 619 ELPCTCGRTRLYPPVACGTPIPDCPY 644
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 24.2 bits (50), Expect = 5.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 162 ELEAESLAADYRWRSELRARGVARLPESELRARKAHSRRSVLEGGP 299
E+ A S++ + RW ELR + + K + SV +G P
Sbjct: 111 EIRASSMSGECRWTKELRFGNIKTFRKHHQECVKRRATISV-QGNP 155
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 23.8 bits (49), Expect = 6.7
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +3
Query: 15 APVWAEPRNRATMARFLRRPQRTVAIRV------IRGYRTVSFEAACVLAGTSPWELE 170
+P++ +PR+RAT +R+ R A + IR R S + L ++ W +E
Sbjct: 109 SPLYTQPRSRATSPSRVRQADRFAAPGIGAGALPIRRKRRDSLAKSVALFESARWSVE 166
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 134 RRLKGDGAISADDPDGN-GALRP 69
RR +G G I +DP G+ G+ RP
Sbjct: 27 RRERGSGGIGREDPRGHYGSERP 49
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 23.8 bits (49), Expect = 6.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -3
Query: 278 PPRMGLPRPQLTFGETR-YAPSTKLAAPP 195
PP LPR L F T PS++ APP
Sbjct: 52 PPTRRLPRKPLPFRSTSLQPPSSQPPAPP 80
>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 163
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 311 ELGTGPPLEHGPPRMGL 261
E PPL+ PPR+GL
Sbjct: 40 EKNDDPPLQARPPRLGL 56
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 23.4 bits (48), Expect = 8.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 159 WELEAESLAADYRWRSELRARGVARLPESELRARKA 266
WE S D W+ +R GVA L ES A +A
Sbjct: 1119 WEASQRSTKDD--WQEWIRRLGVALLRESPSHALRA 1152
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 23.4 bits (48), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 25 GLSRATGPLWLGSCAGRSAPLPSGSSADIAPS 120
G S L S GRSAP P+G+ A + S
Sbjct: 281 GKSSVINALVNRSANGRSAPCPAGNVAGMTTS 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,110
Number of Sequences: 5004
Number of extensions: 20142
Number of successful extensions: 65
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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