Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0455
(328 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.7
SB_10703| Best HMM Match : Homeobox (HMM E-Value=4.6e-08) 27 2.7
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46) 27 3.6
SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07) 27 3.6
SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_19476| Best HMM Match : Extensin_2 (HMM E-Value=0.014) 27 4.8
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 27 4.8
SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05) 27 4.8
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_40002| Best HMM Match : AvrB_AvrC (HMM E-Value=2.5) 26 6.3
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 26 6.3
SB_47224| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_7882| Best HMM Match : DUF548 (HMM E-Value=3.3) 26 6.3
SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47) 26 6.3
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08) 26 8.3
SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65) 26 8.3
SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2) 26 8.3
SB_13957| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 68 PAAAHRCHQGHPRISHR 118
P HR HQ HP+++HR
Sbjct: 246 PQVTHRYHQQHPQVTHR 262
>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 140 HTRRLKGDGAISADDPDGNGALRPAQ 63
HT K DG S D DGNG + P +
Sbjct: 860 HTEASKDDGKNSDDSSDGNGHVIPTE 885
>SB_10703| Best HMM Match : Homeobox (HMM E-Value=4.6e-08)
Length = 531
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 119 DGAISADDPDGNGALRPAQEPSHSGPVARLSPH 21
D I D P G R PS GP + +SPH
Sbjct: 362 DHKIIPDSPTNAGRFRGKTFPSFGGPNSHVSPH 394
>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
Length = 320
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 199 GAASFVLGA*RVSPKVSCGRGRPILGGPCSRGGPVPN 309
G + + A ++ KV+C GR LGG C G +P+
Sbjct: 268 GGYNAAIRAGQLGLKVACIEGRETLGGTCLNVGCMPS 304
>SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 10 PAHLCGLSRATGPLWLGSCAGRSAP-LPSGSSADIAP 117
P H GLS+ TGP + R+AP P G S AP
Sbjct: 213 PDHTLGLSKRTGPDHTHGVSKRTAPHHPLGLSKHTAP 249
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 10 PAHLCGLSRATGPLWLGSCAGRSAP-LPSGSSADIAP 117
P H GLS+ TGP + R+AP P G S AP
Sbjct: 105 PDHTLGLSKRTGPDHTHGVSKRTAPDHPLGVSKRTAP 141
>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
Length = 1844
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 122 GDGAISADDPDGNGALRPAQEPSH-SGPVARLSPHRCAGPA 3
G+ S+ GNG+ + P + SGP+ ++ P +CAGP+
Sbjct: 478 GNRTGSSGSRPGNGSGPLGKRPGNGSGPLGKI-PRKCAGPS 517
>SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 51 MARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTS 155
MA F+ R + + RV R + + F A CVLA +S
Sbjct: 1 MAAFMARCRSDLFRRVFRKSQVLEFLARCVLASSS 35
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = -3
Query: 236 ETRYAPSTKLAAPPIVGSEXXXXXXXXXXXXQHTRRLKGDGAISADDPDGNGALRPAQ-- 63
E R P + APP G + + +G A + + + + RPA
Sbjct: 250 EHRVTPPSFPTAPPRAGYDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPH 309
Query: 62 ---EPSHSGPVARLSPH 21
+P+H+ P+ R SPH
Sbjct: 310 YNSDPAHTEPLPRFSPH 326
>SB_19476| Best HMM Match : Extensin_2 (HMM E-Value=0.014)
Length = 366
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 306 GYRAPPRARTAENGPSAPAAHFRGDALRPEHEARCATDSRQR 181
GY P R A P P + ++ P+ +A+CA+ QR
Sbjct: 301 GYAPVPSQRDAGYAPVPPQRDAKYASVPPQRDAKCASVPPQR 342
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 140 HTRRLKGDGAISADDPDGNG 81
HTR L+G G I+ + +GNG
Sbjct: 1053 HTRALEGSGTIATNGGNGNG 1072
>SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05)
Length = 659
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 7 GPAHLCGLSRATGPLWLGSCAGRSA 81
GP+ C L R TGP W CA A
Sbjct: 221 GPSS-CTLGRTTGPTWRAYCAADPA 244
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -3
Query: 284 HGPP-RMGLPRPQLTFG 237
HGPP RMGLP+P L G
Sbjct: 382 HGPPARMGLPQPLLENG 398
>SB_40002| Best HMM Match : AvrB_AvrC (HMM E-Value=2.5)
Length = 633
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 68 PAAAHRCHQGHPRISH 115
PA AH GHPR+ H
Sbjct: 593 PAGAHNMAGGHPRVQH 608
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 114 TVSFEAACVLA-GTSPWELEAESLAADYRWRSELRARGV 227
T F+AA A GT PWEL + S D+ R ELR G+
Sbjct: 694 TFHFKAARGQAVGTDPWELCSGSHGKDF--RVELRFTGI 730
>SB_47224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 ELEAESLAADYRWRSELRARGVARLPESELRARKAHSRRSV-LEGGPGTQFA 314
ELE E+LAA + RS + A+ +++ R H R LEGG T A
Sbjct: 205 ELERENLAA-HSSRSRVLGSSNAKQSSEQVKRRGHHEHRQPHLEGGVVTSLA 255
>SB_7882| Best HMM Match : DUF548 (HMM E-Value=3.3)
Length = 428
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 68 PAAAHRCHQGHPRISH 115
PA AH GHPR+ H
Sbjct: 379 PAGAHNMAGGHPRVQH 394
>SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)
Length = 715
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 213 RARGVARLPESELRARKAHSRRSVLEGGPG 302
+A+G+ +LP S+ + S+ EGGPG
Sbjct: 238 QAQGINKLPVSQPTTSGQQNLSSIQEGGPG 267
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 126 EAACVLAGTSPWELEAESLAADYRWRSELRARGVARLPESELRARKAH 269
E+ C+L G P A+++ D + +L ++P+S LR K +
Sbjct: 1246 ESICILLGVKPDWPSAKTMLGDAGFLKKLMDYDKDKIPDSTLRKLKKY 1293
>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1452
Score = 25.8 bits (54), Expect = 8.3
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 135 CVLAGTSPWELEAESLAADYRWRSELR-ARGVARLPESELRARKAHSRRSVLEGGP 299
CV+ GT+PW A S D R +LR G A ES + K HSR G P
Sbjct: 79 CVIRGTTPW--RANSPRRDIRNVPDLRKITGHADNSES-IVLFKRHSRIQQTNGKP 131
>SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)
Length = 833
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 153 SPWELEAESLAADYRWRSELRARGVARLPESELRAR--KAHSRRSVLEGGPGT 305
+PW ++L R + + R G P E+ + K +++R ++EGGPG+
Sbjct: 16 APWYDNNDTLLVKMRIKRK-RQGGEEIFPVDEMFTKDCKTYNKRVLVEGGPGS 67
>SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)
Length = 861
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 235 SPKVSCGRGRPILGGPCS-RGGPVPNSPYS 321
SPK+ GRG P GP S R P SP S
Sbjct: 235 SPKIMPGRGSPSSCGPLSPRSSPNSLSPRS 264
>SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)
Length = 759
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 303 YRAPPRARTAENGPSAP 253
+R P RA T+E GPS P
Sbjct: 3 FRGPRRAPTSEEGPSRP 19
>SB_13957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 299 GPPLEHGPPRMGLPRP--QLTFGETRYAP 219
GPP HGPPR L LT+ TR P
Sbjct: 115 GPPRFHGPPRHHLRGACFALTYPSTRTGP 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,191,366
Number of Sequences: 59808
Number of extensions: 215043
Number of successful extensions: 900
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -