Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0455
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    31   0.20 
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    31   0.20 
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    31   0.20 
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   2.4  
L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    27   3.2  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    27   3.2  
Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical pr...    26   5.6  
U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    26   5.6  
AL110477-7|CAB54332.1|  158|Caenorhabditis elegans Hypothetical ...    26   7.4  
AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical ...    26   7.4  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    26   7.4  
Z69792-3|CAA93666.1|  284|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
           protein H28G03.2c protein.
          Length = 275

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 296 PPLEHGPPRMGLPRPQLTFGETRYA--PSTKLAAPP 195
           PP+   PP +G+P P +  G   YA  P   L  PP
Sbjct: 95  PPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPP 130


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
           protein H28G03.2b protein.
          Length = 298

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 296 PPLEHGPPRMGLPRPQLTFGETRYA--PSTKLAAPP 195
           PP+   PP +G+P P +  G   YA  P   L  PP
Sbjct: 118 PPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPP 153


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 296 PPLEHGPPRMGLPRPQLTFGETRYA--PSTKLAAPP 195
           PP+   PP +G+P P +  G   YA  P   L  PP
Sbjct: 368 PPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPP 403


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 302 TGPPLEHGPPRMGLPRPQLTFGETRYAPSTKLAAPP 195
           T PP  HG P MG P P   +   +Y P   L  PP
Sbjct: 63  TMPPGPHGMPFMGGPPPHHQY-HLQYPPPHGLGPPP 97


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 305 GTGPPLEHGPPRMGLPRPQLTFGETRYAPSTKLAAPPIVGSE 180
           G+       PPR G PR      +TR +P  +  +PP  G +
Sbjct: 207 GSAGNRRRSPPRRGSPRRGSPRRDTRRSPPRRRGSPPARGGD 248


>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 7   GPAHLCGLSRATGPLWLGSCAGRSAPLPSGSSADIAP 117
           GPA   G     GP      AG S P P+G + D  P
Sbjct: 235 GPAGAAGPPGPPGPAGNPGSAGASEPGPAGPAGDAGP 271


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 7   GPAHLCGLSRATGPLWLGSCAGRSAPLPSGSSADIAP 117
           GPA   G     GP      AG S P P+G + D  P
Sbjct: 245 GPAGAAGPPGPPGPAGNPGSAGASEPGPAGPAGDAGP 281


>Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical
           protein C47E12.3 protein.
          Length = 568

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 296 PPLEHGPPRMGLPRPQLTFGETRYAPSTKLAAPPIVGSE 180
           PP ++ PP   LPR   +F ET  A       PP+  S+
Sbjct: 514 PPSQYDPPLKPLPRTNSSFCET--ATDFTFGTPPLRHSQ 550


>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 96  VIRGYRTVSFEAACVLAGTSPWELEAE 176
           +IR  R +  EA C+ AG   W++  +
Sbjct: 109 IIRDSRCIDVEALCIRAGKEIWKIRVD 135


>AL110477-7|CAB54332.1|  158|Caenorhabditis elegans Hypothetical
           protein Y113G7B.11 protein.
          Length = 158

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 271 LGGPCSRGGPVPNSPYSES 327
           LGGP S+  PVP S  S S
Sbjct: 92  LGGPSSQAAPVPKSSSSRS 110


>AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical
           protein Y32F6A.2 protein.
          Length = 673

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 78  RTVAIRVIRGYR-TVSFEAACVLAGTSPWELEAESLAADY 194
           RT+++ V   Y  T+   A+  +  TSPWE   ES + DY
Sbjct: 169 RTISLSVWAIYDLTIFTHASQSIWSTSPWESCQESQSGDY 208


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 229  RVSPKVSCGRGRPILGGPCSRGGP 300
            R  P    G G P+ GGP  RGGP
Sbjct: 1479 RGMPPPMRGGGPPMRGGPPMRGGP 1502



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 305  GTGPPLEHGPPRMGLPRPQLTFGETRYAPSTKLAAPPIVGS 183
            G GPP+  GPP  G P P    G     P   + +P + GS
Sbjct: 1487 GGGPPMRGGPPMRGGP-PMFRGGPP--GPGRGMPSPMMRGS 1524


>Z69792-3|CAA93666.1|  284|Caenorhabditis elegans Hypothetical
           protein F40E10.5 protein.
          Length = 284

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 165 LEAESLAADYRWRSELRARGV---ARLPESELRARKA 266
           L  ESLA   +W  EL+ R V    RL E    ARKA
Sbjct: 137 LTGESLALFNKWEEELKTRKVEVARRLSELSPDARKA 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,726,789
Number of Sequences: 27780
Number of extensions: 145145
Number of successful extensions: 486
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)