Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0455
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    20   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   8.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 34   RATGPLWLGSCAGRSAPLPSGSSADIAPS 120
            R+ G  W G    R  P+P      ++P+
Sbjct: 914  RSPGRAWPGDSDIRQRPIPRSDDIRLSPA 942


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 1   AAGPAHLCGLSRATGPLWLGSCAGRSAPLP 90
           AA    L   S A G  + GSC     PLP
Sbjct: 413 AASKEDLSPSSLADGARFGGSCLIHGPPLP 442


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 1   AAGPAHLCGLSRATGPLWLGSCAGRSAPLP 90
           AA    L   S A G  + GSC     PLP
Sbjct: 413 AASKEDLSPSSLADGARFGGSCLIHGPPLP 442


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 276 AENGPSAPAAHFR 238
           A+ GP   +AHFR
Sbjct: 135 ADEGPFTTSAHFR 147


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 68 AQEPSHSGPVARLSPHR 18
          +Q+PS   P  + SPH+
Sbjct: 13 SQQPSSGAPGPQPSPHQ 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,387
Number of Sequences: 438
Number of extensions: 1532
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)