Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0455
(328 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ... 31 0.18
At5g62070.1 68418.m07790 calmodulin-binding family protein conta... 29 0.73
At5g37060.1 68418.m04448 cation/hydrogen exchanger, putative (CH... 27 2.2
At4g31340.1 68417.m04445 myosin heavy chain-related contains wea... 27 2.2
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 27 3.9
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 27 3.9
At1g68660.1 68414.m07845 expressed protein 27 3.9
At3g12990.1 68416.m01618 3' exoribonuclease family protein simil... 26 5.2
At3g08670.1 68416.m01007 expressed protein 26 5.2
At2g30400.1 68415.m03702 ovate family protein 57% similar to ova... 26 5.2
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 26 5.2
At5g37840.1 68418.m04556 expressed protein predicted proteins, A... 26 6.8
At2g36590.1 68415.m04487 proline transporter, putative strong si... 26 6.8
At1g76010.1 68414.m08825 expressed protein 26 6.8
At1g48770.1 68414.m05458 hypothetical protein 26 6.8
At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative (CH... 25 9.0
At5g56240.1 68418.m07018 expressed protein 25 9.0
At5g18140.1 68418.m02130 DNAJ heat shock N-terminal domain-conta... 25 9.0
At3g60500.2 68416.m06767 3' exoribonuclease family protein simil... 25 9.0
At3g60500.1 68416.m06766 3' exoribonuclease family protein simil... 25 9.0
At2g39890.1 68415.m04903 proline transporter 1 (ProT1) identical... 25 9.0
At2g27130.1 68415.m03260 protease inhibitor/seed storage/lipid t... 25 9.0
At1g72180.1 68414.m08346 leucine-rich repeat transmembrane prote... 25 9.0
>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1720
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 314 GELGTGPPLEHGPPRMGLPRPQLTFGETRYAPSTKLAAPPI 192
G + +GP ++ PP PQL+ G+ Y P + PPI
Sbjct: 71 GGIRSGPSIQRAPPLSASQNPQLSIGKP-YRPGGVQSVPPI 110
>At5g62070.1 68418.m07790 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 403
Score = 29.1 bits (62), Expect = 0.73
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 289 SSTDRREWAFRARSSLSGRRA 227
SS D+R W+F RSS S +RA
Sbjct: 19 SSRDKRRWSFTTRSSNSSKRA 39
>At5g37060.1 68418.m04448 cation/hydrogen exchanger, putative
(CHX24) similar to Na+/H+-exchanging protein NapA -
Enterococcus hirae, PIR:A42111; monovalent cation:proton
antiporter family 2 (CPA2) member, PMID:11500563
Length = 859
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 25 GLSRATGPLWLGSCAGRSAPLPS 93
GLS A GP+WLG PL S
Sbjct: 318 GLSIAVGPIWLGLLVPHGPPLGS 340
>At4g31340.1 68417.m04445 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, nonmuscle type A
(Cellular myosin heavy chain, type A) (Nonmuscle myosin
heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) [Homo
sapiens]
Length = 437
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 6 RSGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEA 131
++ A WAEP +++ + TV I V +RT+S +A
Sbjct: 244 KAQAEKWAEPHVENVKTKYIPAIKETVTIHVEPHFRTLSIKA 285
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 10 PAHLCGLSRATGPLWLGSCAGRSAPLPSGSSADI 111
P + L +T L GSC +S+P SG DI
Sbjct: 430 PEGVISLPTSTNALVKGSCQKKSSPSTSGKQEDI 463
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 10 PAHLCGLSRATGPLWLGSCAGRSAPLPSGSSADI 111
P + L +T L GSC +S+P SG DI
Sbjct: 503 PEGVISLPTSTNALVKGSCQKKSSPSTSGKQEDI 536
>At1g68660.1 68414.m07845 expressed protein
Length = 159
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 140 HTRRLKGDGAISADDPDGNG 81
H +L+G+G +S+ +PDG G
Sbjct: 139 HCMQLRGNGLLSSVEPDGGG 158
>At3g12990.1 68416.m01618 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 307
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 93 RVIRGYRTVSFEAACVLAGTSPWELEAE 176
R +R R V E+ CVLAG W + +
Sbjct: 113 RALRESRAVDTESLCVLAGKLVWSVRID 140
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 244 VSCGRGRPILGGPCSRGGPVPNSP 315
+S GR RP+ G ++ P P P
Sbjct: 345 ISAGRSRPVGGSSMAKASPEPKGP 368
>At2g30400.1 68415.m03702 ovate family protein 57% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 320
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 293 PLEHGPPRMGLPRPQLTFGETRYAPSTKLAAPP 195
P H PR L +++ +T Y PS K PP
Sbjct: 66 PPHHNSPRNSLHTKKMSKRKTLYKPSLKPLTPP 98
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 294 PPRARTAENGPSAPAAHFRGDALRPEHEARCAT 196
PP A + + GP P H G A P + AT
Sbjct: 147 PPPASSPQGGPKKPKKHHPGPATSPPAPSAPAT 179
>At5g37840.1 68418.m04556 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 214
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 308 LGTGPPLEHGPPRMGLPRPQLT 243
+G GP L H R+ LPR Q+T
Sbjct: 123 VGDGPELGHTRVRLRLPRSQIT 144
>At2g36590.1 68415.m04487 proline transporter, putative strong
similarity to proline transporter 1 GI:1769901 from
[Arabidopsis thaliana]; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 436
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 28 LSRATGPLWLGSCAGRSAPLPSGSSADIAPSP 123
L+ GPLW+ + A SA L S S I SP
Sbjct: 285 LNNVNGPLWVKALANISAILQSVISLHIFASP 316
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 315 GRIGYRAPPRARTAENGPSAPAAHFRG 235
GR GY PP+ R +GPS + G
Sbjct: 264 GRRGYDGPPQGRGGYDGPSQGRGGYDG 290
>At1g48770.1 68414.m05458 hypothetical protein
Length = 179
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -3
Query: 296 PPLEHGPPRMGLPRPQLTFGETRYAPSTKLAAPP 195
PP E PQL +G+ R+ L +PP
Sbjct: 3 PPFERSKRLHNFSLPQLRWGQQRFLRCVNLPSPP 36
>At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative
(CHX25) similar to Na+/H+-exchanging protein slr1595,
Synechocystis sp., PIR:S74951; monovalent cation:proton
antiporter family 2 (CPA2) member, PMID:11500563
Length = 857
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 25 GLSRATGPLWLGSCAGRSAPLPS 93
G++ A GP+WLG PL S
Sbjct: 319 GMAIAVGPIWLGLVVPHGPPLGS 341
>At5g56240.1 68418.m07018 expressed protein
Length = 986
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 140 HTRRLKGDGAISADDPDGNGALRPAQEPSHSG 45
H R L+ D +S DD + N L PS SG
Sbjct: 574 HERELRDDDYVSGDDGENNEVLL-RSNPSSSG 604
>At5g18140.1 68418.m02130 DNAJ heat shock N-terminal
domain-containing protein similar to DnaJ protein Tid-1
[Homo sapiens] GI:17066575; contains Pfam profile
PF00226 DnaJ domain
Length = 333
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 49 LWLGSCAGRSAPLPSGS 99
+W+GS R APLP G+
Sbjct: 301 MWVGSNLARHAPLPQGA 317
>At3g60500.2 68416.m06767 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 93 RVIRGYRTVSFEAACVLAGTSPWELEAE 176
R +R R V E+ CVLAG W + +
Sbjct: 113 RGLRESRAVDTESLCVLAGKMVWSVRID 140
>At3g60500.1 68416.m06766 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 93 RVIRGYRTVSFEAACVLAGTSPWELEAE 176
R +R R V E+ CVLAG W + +
Sbjct: 113 RGLRESRAVDTESLCVLAGKMVWSVRID 140
>At2g39890.1 68415.m04903 proline transporter 1 (ProT1) identical to
proline transporter 1 GI:1769901 from [Arabidopsis
thaliana]
Length = 442
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 28 LSRATGPLWLGSCAGRSAPLPSGSSADIAPSP 123
L+ GPLW+ + A SA L S S I SP
Sbjct: 291 LNSVNGPLWVKALANVSAILQSVISLHIFASP 322
>At2g27130.1 68415.m03260 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 176
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 49 LWLGSCAGRSAPLPSGSSADIAPSPL 126
L+L C+G+S P P +AD SP+
Sbjct: 13 LFLSLCSGQSPPAPEPIAADGPSSPV 38
>At1g72180.1 68414.m08346 leucine-rich repeat transmembrane protein
kinase, putative similar to GI:3641252 from [Malus x
domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
Length = 977
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 322 HYRANWVPGPPSSTDRREWAFRARSSLSGR 233
HY +P + W F ARS+L+G+
Sbjct: 180 HYEEGIIPESIGGLKKLTWLFLARSNLTGK 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,433,080
Number of Sequences: 28952
Number of extensions: 138378
Number of successful extensions: 475
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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