Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0454
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   1.5  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    25   4.6  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    25   6.1  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   6.1  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 323 ALPTPSPLFQALDPVGLQFSGIGTQSPGTVCPGTNDP 213
           A+PT S +   L  +   F   G  +PGT  PGT  P
Sbjct: 458 AVPTTSSM--PLQGMPTMFGAPGVSAPGTEAPGTGTP 492


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +2

Query: 242 RGSAFRCL-KTGGPLDPVLERAA---RESGVPVRDVLEHLPRDLAVWVDPGEVSYRIGEK 409
           R   FRC+ K    L+P+ +  A   R+ G   +  LE L    A WV+PG V   + EK
Sbjct: 15  RPRRFRCVPKDKAILNPLAKNIADVVRDLGYKCK--LEPLKTHPADWVNPGRVEMVLPEK 72


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 329 RDVLEHLPRDLAVWVDPGEVSYRIGEKGAV--KVLFSSDQRAAD 454
           RD+++HLP+ +A+   P  +   +     +  ++L+ +  ++AD
Sbjct: 134 RDIVQHLPQMIAICTYPSNLRKSLSSLAELSDEILYLAQDKSAD 177


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 465 SVLSSAARWSLLNKTFTAPFSPIRYDTSPGSTQ 367
           +VL++  + ++  K+F+AP SP R   S  S+Q
Sbjct: 45  TVLNNPKQSTVSRKSFSAPTSPTRNKRSGSSSQ 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,871
Number of Sequences: 5004
Number of extensions: 46747
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)