Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0454
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0874 - 28988687-28989736                                         29   2.0  
10_02_0141 + 5761931-5762020,5762170-5762201,5762453-5762604,576...    28   3.5  
02_05_0209 - 26786399-26786449,26786533-26786625,26786721-267868...    28   3.5  
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    28   4.6  
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101...    28   4.6  
07_01_0322 - 2258067-2258519,2258620-2258781,2258896-2259159,225...    27   6.0  
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751...    27   8.0  
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053...    27   8.0  
01_06_0692 + 31276342-31276479,31277161-31277408,31277541-312777...    27   8.0  

>04_04_0874 - 28988687-28989736
          Length = 349

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 383 HLDQPRQPDPWAGVLVHHVRALPTPSP-LFQALD-PVGLQFSGIGTQSPGTVCPGTND 216
           +L  P    P A  +VH  R +PTPSP L  +LD P+ +     GT +   + P   D
Sbjct: 283 YLVDPAATQPPAPEIVH-TRLIPTPSPQLGSSLDTPIQVDSETEGTNTESEIKPDITD 339


>10_02_0141 +
           5761931-5762020,5762170-5762201,5762453-5762604,
           5763688-5763770,5764689-5764766,5764884-5764979,
           5765076-5765345
          Length = 266

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/84 (25%), Positives = 37/84 (44%)
 Frame = +2

Query: 221 WYPDRPCRGSAFRCLKTGGPLDPVLERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRI 400
           WY     +G+ F  L+TG  L   +   A      V   LEHL + + +  +   ++ R+
Sbjct: 54  WYGLTFTKGARFYSLETGNTLAMSILLGAYSKMCMVASTLEHLRKKIEISTERIRLA-RV 112

Query: 401 GEKGAVKVLFSSDQRAADERTDRE 472
            E+ A K   ++ Q   DE   ++
Sbjct: 113 KEEQAKKAWEAAAQIVKDEENAKQ 136


>02_05_0209 -
           26786399-26786449,26786533-26786625,26786721-26786861,
           26786973-26787050,26787146-26787247,26787595-26787693,
           26787804-26787875,26787964-26788104,26788222-26788503
          Length = 352

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 56  FSPYDCSLVLPKMHIEVQVALNFVISYLYNKLPRRRVNI-FGEELEKALKDKFRGHWYPD 232
           +S    ++ + ++ IE +V +N ++  + +  PRRR+N+ FGE+     +D     W   
Sbjct: 38  YSSSGMNVGVSRLKIE-EVLVNGLLDAMKSSSPRRRLNVAFGEDNSSEEEDPAYSAWMAK 96

Query: 233 RPCRGSAFR 259
            P   ++F+
Sbjct: 97  CPSALASFK 105


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 410 PFLRYGMILHLDQPRQPDPWAGV 342
           P  RY + L   QPR+P  W G+
Sbjct: 231 PVYRYKICLRFTQPREPAHWEGI 253


>01_06_1516 -
           37908284-37908497,37909666-37909733,37909809-37910186,
           37910315-37910393,37910433-37910749
          Length = 351

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 293 LERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRI 400
           L+R A E+ + +RD++E +P  +A W D G   + I
Sbjct: 62  LQRIANET-IELRDLVEIVPEPIAKWQDVGPDHFNI 96


>07_01_0322 -
           2258067-2258519,2258620-2258781,2258896-2259159,
           2259196-2259294,2259723-2260131,2260223-2260350,
           2261115-2261181,2262766-2262838,2262911-2263130
          Length = 624

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +2

Query: 302 AARESGVPVRDVLEH--LPRDLAVWVDPGEVSYRIGEKGAVKVLFSSDQRAADERTDREV 475
           AAR   +P  D++ H  LP    ++V     + R G+KG+  +++++DQ  A    ++++
Sbjct: 409 AARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDI 468


>11_02_0028 +
           7517196-7517206,7517256-7517312,7517423-7517503,
           7518009-7518108,7518454-7518507,7519045-7519115,
           7519248-7519455,7519647-7519700,7519934-7520025,
           7520090-7520285,7521158-7521339,7521429-7521496,
           7522848-7522920,7523010-7523071,7523155-7524079,
           7524843-7525133,7525601-7525871
          Length = 931

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 460 SFIGSTLVTAEQNLHSALFSDTV*YFTW 377
           S IG+TL+  E+N+   L+ + + Y+ W
Sbjct: 497 SAIGTTLLQGEENIGQFLYLEGIEYYMW 524


>06_03_0507 +
           21603472-21603750,21604371-21604463,21605046-21605372,
           21605588-21605863,21606095-21607114
          Length = 664

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 470 PDRFFHRQHAGHC*TKPSQRPFLRYGMILHLDQPRQPDPW 351
           P  +F+  H G       QR    YG ++ LD P QP+P+
Sbjct: 156 PGTYFYHGHFG------MQRAAGLYGSLIVLDSPEQPEPF 189


>01_06_0692 +
           31276342-31276479,31277161-31277408,31277541-31277722,
           31278007-31278143,31278381-31278546,31278615-31278731,
           31279038-31279198,31279431-31279634
          Length = 450

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -3

Query: 482 RVLPPDRFFHRQHAGHC*TKPSQRPFLRYGMILHLDQPRQPDPWAGVLVHHVRALPTPSP 303
           R      FF   H  H    P  RP   YG ++HL   R   P +  +     A P+P P
Sbjct: 46  RTAATSTFFANPHVKHL-PGPFLRPSPHYGALVHLPSFRNKTPISIAMA----ASPSPPP 100

Query: 302 L 300
           L
Sbjct: 101 L 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,636
Number of Sequences: 37544
Number of extensions: 371021
Number of successful extensions: 1065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)