Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0454
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 1e-38
SB_16439| Best HMM Match : BTG (HMM E-Value=0) 93 1e-19
SB_17715| Best HMM Match : BTG (HMM E-Value=3.6e-30) 85 3e-17
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_17577| Best HMM Match : fn3 (HMM E-Value=0) 28 4.7
SB_42364| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06) 27 6.2
SB_7257| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 155 bits (377), Expect = 1e-38
Identities = 68/131 (51%), Positives = 96/131 (73%), Gaps = 1/131 (0%)
Frame = +2
Query: 92 MHIEVQVALNFVISYLYNKLPRRRVNIFGEELEKALKDKFRGHWYPDRPCRGSAFRCLKT 271
M +E+QV++NF++++LYNKLPRRRV++FGEEL L KF GHWYP++P +GS +RC+
Sbjct: 660 MELEIQVSVNFLMNFLYNKLPRRRVDLFGEELAMKLTKKFDGHWYPNKPTKGSGYRCILI 719
Query: 272 GGPLDPVLERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRIGEKGAVKVLFSSDQRA- 448
LDP+L AARESG+ + DV +LP L +W+DP EVSYRIGE+G+V V++ + +
Sbjct: 720 THYLDPILAAAARESGLKIDDVKANLPEKLCLWIDPHEVSYRIGEQGSVNVIYKKENTSI 779
Query: 449 ADERTDREVTR 481
D+ TD E R
Sbjct: 780 LDDITDSETAR 790
>SB_16439| Best HMM Match : BTG (HMM E-Value=0)
Length = 158
Score = 92.7 bits (220), Expect = 1e-19
Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Frame = +2
Query: 92 MHIEVQVALNFVISYLYN--KLPRRRVNIFGEELEKALKDKFRGHWYPDRPCRGSAFRCL 265
M EV+ A +F+ + L K+ RRV F ++E+ L +++R HW+P P GS FRC+
Sbjct: 1 MKTEVRTACSFLATILRRSTKVNDRRVEDFSTKMEELLCERYRHHWHPQNPLLGSGFRCI 60
Query: 266 KTGGPLDPVLERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRIGEKGAV 418
+ +DP++ AAR +G + L+ P +L +WVDP EV +RIGE G++
Sbjct: 61 RINHTMDPIVAAAARAAGFSY-EQLKSFPEELTLWVDPNEVCFRIGENGSI 110
>SB_17715| Best HMM Match : BTG (HMM E-Value=3.6e-30)
Length = 184
Score = 85.0 bits (201), Expect = 3e-17
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Frame = +2
Query: 92 MHIEVQVALNFVISYLYN-KLPRRRVNIFGEELEKALKDKFRGHWYPDRPCRGSAFRCLK 268
M EV A+NFV+S L N L +V F E LE+ + ++F+ HW+P++P +G+A+RCL
Sbjct: 1 MKNEVSSAVNFVVSNLTNTSLSSEQVGQFKENLEQLITERFQDHWHPNKPLKGNAYRCLN 60
Query: 269 TG-GPLDPVLERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRIG 403
+DP+L +A+ SG + E P LA+W+DP +V R+G
Sbjct: 61 VDTTAIDPLLVKASLASGFSPLKLQEVFPDGLALWIDPEDVCCRVG 106
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Frame = -3
Query: 467 DRFFHRQHAGHC*TK--PSQRPFLRYGMILHLDQPRQPDPWAGVLVHHVRALPTPSPLFQ 294
DR FH QH H T P PF R ++ Q + G L H R P +
Sbjct: 805 DRLFHSQHPSHLTTSTAPPPFPFQRTDILAEPAAAPQQQQYQGGLQH--RNSPLQARQKS 862
Query: 293 ALDPVGLQFSGIGTQSP 243
A P Q SP
Sbjct: 863 AFQPPAAQQPAFQPPSP 879
>SB_17577| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1690
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -3
Query: 413 RPFLRYGMILHLDQPRQPDPWAGVLVHHVRALPTPSP 303
R + Y ++L+ P PW +LV +PT P
Sbjct: 741 RKYTEYSVMLYAFNKVGPSPWGALLVRTAEDVPTAPP 777
>SB_42364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 425 KPSQRPFLRYGMILHLDQPRQPDPW 351
+P P L YG ++L + ++PDPW
Sbjct: 22 QPDYDPNLPYGPKVYLARKKKPDPW 46
>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
Length = 127
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 53 RFSPYDCSLVLPKMHIEVQVALNFVISYLYNKLPRRRVNIFGEELEKALKDKFR-GH 220
++S C+L +P MH ++ I + N +P RV +G+++ L ++ GH
Sbjct: 67 KWSAEKCALYIPNMHYVIRNCCGLRIVFYENSVPLFRV--YGQDIFLVLPERLSLGH 121
>SB_7257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 425 KPSQRPFLRYGMILHLDQPRQPDPW 351
+P P L YG ++L + ++PDPW
Sbjct: 47 QPDYDPNLPYGPKVYLARKKKPDPW 71
>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 161 RVNIFGEELEKALKDKFRGHWYPDRPCRGSAFRCLKTGGP 280
+V ++G +E L+ F+GH+ D G ++ GP
Sbjct: 116 KVRVYGPGIENGLRYNFKGHFLVDTKGAGPGTLKIRIHGP 155
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,424,895
Number of Sequences: 59808
Number of extensions: 408041
Number of successful extensions: 1002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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