Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0454
(487 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 33 0.10
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 29 1.3
At3g09400.1 68416.m01116 protein phosphatase 2C family protein /... 29 1.3
At2g37010.1 68415.m04539 ABC transporter family protein contains... 29 1.3
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 27 5.1
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 27 5.1
At1g69570.1 68414.m08001 Dof-type zinc finger domain-containing ... 27 5.1
At4g34270.1 68417.m04872 TIP41-like family protein contains Pfam... 27 6.7
At3g08670.1 68416.m01007 expressed protein 27 6.7
At5g25190.1 68418.m02986 ethylene-responsive element-binding pro... 27 8.9
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac... 27 8.9
At3g28150.1 68416.m03514 expressed protein 27 8.9
At2g33585.1 68415.m04116 expressed protein 27 8.9
At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.9
At2g30140.1 68415.m03668 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.9
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 33.1 bits (72), Expect = 0.10
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 302 AARESGVPVRDVLEH--LPRDLAVWVDPGEVSYRIGEKGAVKVLFSSDQRAADERTDREV 475
AAR VP D++ H LP + +V + R G+KG+ +++S DQ A + +REV
Sbjct: 408 AARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREV 467
Query: 476 TRAF 487
F
Sbjct: 468 GSRF 471
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 287 PVLERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRIGEKGAVKVLF 430
P++E A ++ + ++ +HL R + + PG VS +G GA K F
Sbjct: 495 PMIEVAFKDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTF 542
>At3g09400.1 68416.m01116 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 650
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 429 NKTFTAPFSPIRYDTSPGSTQTARSLGRCSSTSRTGT 319
+K+ P P+R D PG+T T RS+ S ++ T T
Sbjct: 49 SKSSFPPEPPLRPDPIPGTTTTFRSISGASVSANTST 85
>At2g37010.1 68415.m04539 ABC transporter family protein contains
ABC transporter domain, Pfam:PF00005
Length = 1063
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 287 PVLERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRIGEKGAVKVLFSS 436
PV+E A ++ + ++ +H+ R + + PG VS +G GA K F S
Sbjct: 461 PVIEVAFKDLTLTLKGKHKHILRSVTGKIMPGRVSAVMGPSGAGKTTFLS 510
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 232 QTVPGLC-VPMPENWRPTGSSA*KSGEGVGS 321
Q G C P P WRP S KS +G+G+
Sbjct: 53 QATVGPCNTPKPSAWRPVEQSKWKSWQGLGT 83
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 232 QTVPGLC-VPMPENWRPTGSSA*KSGEGVGS 321
Q G C P P WRP S KS +G+G+
Sbjct: 53 QATVGPCNTPKPSAWRPVEQSKWKSWQGLGT 83
>At1g69570.1 68414.m08001 Dof-type zinc finger domain-containing
protein nearly identical to H-protein promoter binding
factor-2b (Arabidopsis thaliana) GI:3386548
Length = 399
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 211 QGSLVPGQTVPGLCVPMPENWRPTGSSA 294
QG L P +P P P W PTG +A
Sbjct: 246 QGFLPPQVMLPNNSSPWPYQWSPTGPNA 273
>At4g34270.1 68417.m04872 TIP41-like family protein contains Pfam
PF04176: TIP41-like family; identical to cDNA putative
cytoskeletal protein mRNA, partial cds GI:5031529
Length = 290
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 350 PRDLAVWVDPGEVSYRI 400
P DLAVW DP +S R+
Sbjct: 258 PVDLAVWSDPSSISQRL 274
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -2
Query: 474 TSRSVLSSAARWSLLNKTFTAPFSPIRYDTSPGSTQTARSLGRCSSTSRTGTP 316
+SRS SS+AR S +T +A S PGS+ ++ R S +SR TP
Sbjct: 197 SSRS--SSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPSTP 247
>At5g25190.1 68418.m02986 ethylene-responsive element-binding
protein, putative ethylene responsive element binding
protein homolog, Stylosanthes hamata, EMBL:U91857
Length = 181
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 486 NARVTSRSVLSSAARWSLLNKTFTAPFSPIRYDTSPGSTQTARS 355
NA TS S L SA + L+K + A + + TQTARS
Sbjct: 68 NAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARS 111
>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
Length = 675
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 113 ALNFVISYLYNKLPRRRVNIFGEELEKALKDKFRGHWYPD 232
A N+ YL + L R N++ + E+ALKD PD
Sbjct: 606 AFNYTDHYLNSVLGRYDGNVYPKLFEEALKDPLNDSVVPD 645
>At3g28150.1 68416.m03514 expressed protein
Length = 414
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 122 FVISYLYNKLPRRRVNIFGEELEKALKDKFRGHWYPDRPCRGSAF 256
FV + + + V F +++ D F+GHW PD+ RGS +
Sbjct: 45 FVYQNPFKSIADQNVLSFQPQIDPEC-DLFKGHWVPDK--RGSLY 86
>At2g33585.1 68415.m04116 expressed protein
Length = 193
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 466 IGSFIGSTL--VTAEQNLHSALFSDTV*YFTWINPDSQI 356
+ SFIG+++ + Q+ S + + T+ YF WI P+ +
Sbjct: 109 VRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDL 147
>At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 440
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 116 GRLALQYAFLGAL--VNSRMEKIDGACHSATGG*LSHC 9
G L L+ A G+L V S +++ CH+A GG +HC
Sbjct: 293 GELKLKEALEGSLGVVVSWCDQLRVLCHAAIGGFWTHC 330
>At2g30140.1 68415.m03668 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 116 GRLALQYAFLGAL--VNSRMEKIDGACHSATGG*LSHC 9
G L L+ A G+L V S +++ CH A GG +HC
Sbjct: 308 GELKLKEALEGSLGVVVSWCDQLRVLCHKAVGGFWTHC 345
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,846,974
Number of Sequences: 28952
Number of extensions: 268929
Number of successful extensions: 733
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -