Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0453
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   1.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   2.6  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    26   4.6  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   8.1  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 476 YHHPAYFCREAVMRFGLKGGAAVVTILETLELVSQGG 586
           +  P+ F  E V+   L GG AVV +  TLE + Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +2

Query: 254 SI*IHLFIEVGSGLVLPLALLKSMGDGNHSPSGGSYARL 370
           SI I+LFI +G  +++P ALL S    NH  S  S++ L
Sbjct: 558 SIGINLFILIGCYVIIPTALLGS----NHDLSKSSFSGL 592


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 352 T*W*VVTVAHGLQQCQGQNQAAAYL 278
           T W +V++ HGLQ C   N   A+L
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHL 225


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 247 CAVNMNSFIHRGRQRLGSAPGIAEVHGRR 333
           C V  ++FIHR   R    P ++E H +R
Sbjct: 157 CLVASDTFIHRRINRFAGLPAVSE-HNKR 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,135
Number of Sequences: 5004
Number of extensions: 66749
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)