Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0453
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0315 - 7179332-7179949 33 0.22
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 31 0.68
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 30 2.1
06_03_0189 - 17697779-17698939 29 2.8
02_02_0400 + 9836045-9837115,9837474-9838577 29 3.6
01_06_1749 - 39636951-39638102 29 4.8
09_06_0234 - 21747724-21747839,21748027-21748096,21749157-217492... 28 6.4
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174... 28 8.4
01_06_0355 + 28657833-28660665,28660762-28661126 28 8.4
>09_02_0315 - 7179332-7179949
Length = 205
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 265 SFIHRGRQRLGSAPGIAEVHGRR*PLTIRWVVCSSAYKGNKKKSFKLETSE 417
S + RGR G A +AEV P + WV+CS Y+GN + KL +E
Sbjct: 75 SVVPRGRVPRGGAR-VAEVLIEPGPERVAWVLCSWGYEGNYLANLKLFDTE 124
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -3
Query: 342 EWLPSPMDFSNARGRTKPLPTSMNK*IHIDSTIFKYRRITNTMVVREDNGICKQL 178
+W P DF ARG T P + + + +S ++ + I M+ + NG+ +QL
Sbjct: 653 DWTPKISDFGLARGYTAPECWQLGR-VEPESDVYSFGVILLEMISGKPNGLMQQL 706
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +2
Query: 101 LPNDKKIKTV*SRVALYCHHITSDLSNCLQIPLSSRTTIVFVIRRYLNIVLSI*IHLFIE 280
+PN+ + + V R++ I D+ LQ+P ++RTT + RR+ +++ S+ HL I+
Sbjct: 1 MPNNAQCQVVDDRLSALPDEILIDILQRLQLPTAARTTT--LARRWTHLLQSM-NHLEID 57
Query: 281 V 283
V
Sbjct: 58 V 58
>06_03_0189 - 17697779-17698939
Length = 386
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -3
Query: 483 WWYPRGLTRGPTTSKLFLSLYHFGCXXXXXXXFIALVGRR-AY-DPPDGEWLPSPMDFSN 310
WWYP G G + + ++ FGC AL+G Y D P +L PM
Sbjct: 6 WWYPGGGGGGGSNNWDLGAVVRFGCGGGRVSPAAALLGEAWEYDDDPFSSFLAPPMTAQQ 65
Query: 309 A 307
A
Sbjct: 66 A 66
>02_02_0400 + 9836045-9837115,9837474-9838577
Length = 724
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 413 DVSSL-NDFFLLPL*ADEHTTHLMVSGYRRPWTSAMPGAEPSRCLPL*IN 267
D SSL D LL L ++H V+ PW SA+P + P+ PL +N
Sbjct: 360 DWSSLPEDLLLLILERLRWSSHPSVAAVCSPWCSAVPPSYPAWITPLLLN 409
>01_06_1749 - 39636951-39638102
Length = 383
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 558 SSIVTTAAPPFKPKRITA 505
SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181
>09_06_0234 -
21747724-21747839,21748027-21748096,21749157-21749294,
21749389-21749493,21750157-21750527,21750612-21750694,
21750803-21751063,21751425-21751606,21752539-21752649,
21752727-21752798,21752883-21753036,21753329-21753341,
21754015-21754084,21754409-21754485,21754582-21754640,
21755327-21755580
Length = 711
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -1
Query: 533 HPSNRNALLL-HGRNRQGGGTRADSQEVLPPVNFFCPYIISDVSSLNDFFLLPL 375
HP LL +G R G G + Q + F CP++ + LN+ L +
Sbjct: 227 HPDELGQLLRSYGEARIGFGAGYNIQSAIKQAVFHCPFLRGGIKDLNNVVFLSI 280
>10_08_0448 +
18015609-18016052,18017147-18017248,18017332-18017475,
18017555-18017705,18017793-18017820,18018456-18018621,
18018701-18018764,18019320-18019423,18019572-18019710,
18020114-18020232,18020333-18020485,18020565-18020654,
18020952-18021029,18021671-18021829,18021914-18022117,
18022209-18022414,18022495-18022630,18022859-18022898,
18023329-18023408,18023569-18024228
Length = 1088
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 226 YSSIFEYCAVNMNSFIHRGRQRLGSAPGIAEVHG 327
Y+S+FE+ +N + G++R G + I +++G
Sbjct: 500 YASLFEWLVEQINKSLSVGKRRTGRSISILDIYG 533
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -1
Query: 659 WTSSQPT--WC*VVTGAHRHPQRKCATHL 579
WT++ P W V G HRHP R A L
Sbjct: 56 WTAAAPYCGWLGVTCGGHRHPLRVTALEL 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,181,685
Number of Sequences: 37544
Number of extensions: 502155
Number of successful extensions: 1044
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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