Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0453
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         30   1.6  
SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               29   4.9  
SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)             29   4.9  

>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 226 YSSIFEYCAVNMNSFIHRGRQRLGSAPG 309
           + S +++C +N++SF H  +Q LGS PG
Sbjct: 877 FPSAWKHCFLNVSSFGHARQQFLGSLPG 904


>SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 HLMVSGYRRPWTSAMPGAEPSRCLPL*INEFILTAQY 243
           HLM SG RRP   ++  A P  C+ +      L AQY
Sbjct: 70  HLMESGGRRPACPSLDVARPKVCMEMLSVSVALVAQY 106


>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 HLMVSGYRRPWTSAMPGAEPSRCLPL*INEFILTAQY 243
           HLM SG RRP   ++  A P  C+ +      L AQY
Sbjct: 287 HLMESGGRRPACPSLDVARPKVCMEMLSVSVALVAQY 323


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 8    PNSARG*IVDNTVLLIYREQVTYFDLKSRASLPNDKKIKTV*SRVALYC 154
            P++A G + + +V L  R Q    D+K  A+L N        + V +YC
Sbjct: 1065 PSNASGNVTEYSVYLAIRSQAAGHDIKDVAALSNPPNAPVQLAFVRVYC 1113


>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
          Length = 186

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 8   PNSARG*IVDNTVLLIYREQVTYFDLKSRASLPNDKKIKTV*SRVALYC 154
           P++A G + + +V L  R Q    D+K  A+L N        + V +YC
Sbjct: 12  PSNASGNVTEYSVYLAIRSQAAGHDIKDVAALSNPPNAPVQLAFVRVYC 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,415,496
Number of Sequences: 59808
Number of extensions: 542490
Number of successful extensions: 879
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)