Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0453
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 112 VIRQTSSTLQIEIRDLFAINKKDGVIHNSPSCRIRHE 2
           V  Q + T + E R  F+ ++   +++   +CR RHE
Sbjct: 491 VQEQPTPTTESEERRFFSFHQWGILVYEPSACRPRHE 527


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 354 PPDGEWLPSPMDFSNARG 301
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 184 FTDSVVFSDDHCVCYSSIFEYCAVNMNSFIH 276
           F D+ +  D  C   +SI   CA++++ +IH
Sbjct: 97  FCDTWIAFDVMCST-ASILNLCAISLDRYIH 126


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 70  DLFAINKKDGVIHN 29
           DLF  N+K+G  HN
Sbjct: 119 DLFFSNEKEGHFHN 132


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 70  DLFAINKKDGVIHN 29
           DLF  N+K+G  HN
Sbjct: 119 DLFFSNEKEGHFHN 132


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 378 LVGRRAYDPPDGEWLP 331
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,316
Number of Sequences: 438
Number of extensions: 5300
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)