Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0453
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24020.1 68417.m03452 RWP-RK domain-containing protein simila...    28   5.3  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    27   9.3  
At2g41640.1 68415.m05145 expressed protein contains Pfam domain,...    27   9.3  

>At4g24020.1 68417.m03452 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 959

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 167 SDLSNCLQIPLSSRTTIV 220
           +DL  CL+IP SSRT IV
Sbjct: 921 ADLQECLEIPRSSRTKIV 938


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
            putative 
          Length = 2172

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -3

Query: 384  IALVGRRAYDPPDGEWLP-SPMDFSNARGRT-KPLPTSMNK*IHID--STIFKYRRITNT 217
            + + G + Y+P  GEW+  SP+D     GR  +P      + I I   S +  Y R+ N 
Sbjct: 851  VIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLRLMNE 910

Query: 216  MVVREDNGICK 184
             +  E   I K
Sbjct: 911  QLPIESQFISK 921


>At2g41640.1 68415.m05145 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 500

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 127 SLISRCFVLSPYYFRPF 177
           S++S CFVLSPYY   F
Sbjct: 48  SILSCCFVLSPYYLFGF 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,940,811
Number of Sequences: 28952
Number of extensions: 375752
Number of successful extensions: 795
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)