Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0452
         (623 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24CW0 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_Q600Z4 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_Q5DE92 Cluster: SJCHGC05177 protein; n=1; Schistosoma j...    33   4.2  
UniRef50_A0DVE1 Cluster: Chromosome undetermined scaffold_65, wh...    33   5.6  
UniRef50_Q23F19 Cluster: MORN repeat variant family protein; n=1...    33   7.3  

>UniRef50_Q24CW0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 505

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +1

Query: 388 LMVCIVVYYVGIIEKYNLSVLIVYVNIF*SVTTLYSMFKYLYMKDSLVG 534
           L+   ++YY   + KYNL  +I+++  F +V  L SM  Y+Y+K +  G
Sbjct: 447 LLFSNILYYY--VNKYNLQSIIIWIIFFITVLNLISMPYYIYVKSTQYG 493


>UniRef50_Q600Z4 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma hyopneumoniae 232|Rep: Putative
           uncharacterized protein - Mycoplasma hyopneumoniae
           (strain 232)
          Length = 394

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 364 IAFNFYFRLMVCIVVYYVGIIEKYNLSVLIVYVNIF*SVTTLYSMFKYLYMKDSLV 531
           IAF+FYF  +V   +     + K    +++  ++IF  + ++Y++ KY   K  LV
Sbjct: 339 IAFSFYFFYIVPRYIAIFACLTKKGFYIILYILDIFVPIVSIYNLIKYKQNKTILV 394


>UniRef50_Q5DE92 Cluster: SJCHGC05177 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC05177 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 351

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 24/93 (25%), Positives = 44/93 (47%)
 Frame = +2

Query: 227 NVYVCRIIFLFYADNVSKSQIINMTECILWHTDKIQHAYVNEFNNLSHLISTSGLWYV*S 406
           N  +  + F+   +N+++ ++I   E I  H+D +Q A++  + N+S    T   W    
Sbjct: 122 NRKIAVLFFMGLTNNLTEQKLIEEEERI--HSDIVQRAFLEHYTNMSRKHMTIMEW---- 175

Query: 407 FIMLGLLKNIIYLCSLYM*TFFNLSQLCTLCSS 505
            I  G  KN+ +L  +   TF ++  L T   S
Sbjct: 176 -ISNGYCKNVPFLVKVDDDTFVDIFHLITYLES 207


>UniRef50_A0DVE1 Cluster: Chromosome undetermined scaffold_65, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_65, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2163

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +2

Query: 317  HTDKIQHAYVNEFNNLSHLISTSGLWYV*SFIMLGLLKNIIYLCSLYM*TFFNLSQLCT 493
            H D      V +   L H + +  L Y+ SF   GL++  +YL S Y  TF +L Q+ T
Sbjct: 1910 HVDSSVKCLVKKIIELLHSMESFALIYIKSFFYQGLIR--VYLSSYYDLTFTSLLQIVT 1966


>UniRef50_Q23F19 Cluster: MORN repeat variant family protein; n=1;
           Tetrahymena thermophila SB210|Rep: MORN repeat variant
           family protein - Tetrahymena thermophila SB210
          Length = 884

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 135 VLETFNNRIVGRHKMVGNEKASLQRVQKSF 46
           VL+T NN +V   +++  +KASL  VQK F
Sbjct: 57  VLDTSNNNVVAIKQLITQDKASLNEVQKEF 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,735,796
Number of Sequences: 1657284
Number of extensions: 11236639
Number of successful extensions: 22855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22846
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)