Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0452
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.68 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.68 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.68 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.68 
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    22   3.6  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 266 DNVSKSQIINMTECILWHTDKIQHAYVNEFNNLSHLISTSGLWYV*SFIMLGLLKNIIYL 445
           D + K +     E I  HTD      V   ++++ + + + +W+     M+  LK+I+ L
Sbjct: 528 DEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRL 587


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 266 DNVSKSQIINMTECILWHTDKIQHAYVNEFNNLSHLISTSGLWYV*SFIMLGLLKNIIYL 445
           D + K +     E I  HTD      V   ++++ + + + +W+     M+  LK+I+ L
Sbjct: 528 DEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRL 587


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 266 DNVSKSQIINMTECILWHTDKIQHAYVNEFNNLSHLISTSGLWYV*SFIMLGLLKNIIYL 445
           D + K +     E I  HTD      V   ++++ + + + +W+     M+  LK+I+ L
Sbjct: 528 DEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRL 587


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 266 DNVSKSQIINMTECILWHTDKIQHAYVNEFNNLSHLISTSGLWYV*SFIMLGLLKNIIYL 445
           D + K +     E I  HTD      V   ++++ + + + +W+     M+  LK+I+ L
Sbjct: 528 DEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRL 587


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
          protein.
          Length = 46

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 56 CTLCKDAFSFPTIL 97
          CT+C  AFS P +L
Sbjct: 10 CTICPKAFSRPWLL 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,608
Number of Sequences: 336
Number of extensions: 3685
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)