Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0452
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    27   2.9  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   3.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   8.9  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   8.9  

>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +1

Query: 379 YFRLMVCIVVYYVGIIEKYNLSVLIVYVNIF*SVT--TLYSMFKYLYMKDSLVGTRAMEV 552
           Y +L+VC  +Y++GI+E+ +    IV V +F S T    ++    L ++ S+  T A  +
Sbjct: 112 YLKLIVCSPLYFMGILEETD----IVNVRLFESETFAKSFNSITTLSVRFSVKNTPAQAI 167

Query: 553 I 555
           +
Sbjct: 168 V 168


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 347 LRRHVVSYLCAKECILSYLLSVTSKHYLHKIKILFGI 237
           LR  ++ YLC +      ++   SK + HK++++FG+
Sbjct: 490 LRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGL 526


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 25  SSCLILTKTFLYSL*GRLLISH 90
           S+ ++L+ TFLYSL   +L+ H
Sbjct: 724 SAIILLSATFLYSLIAEILVEH 745


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 74   RPYKEYKKVLVKIKHELI 21
            R Y+E +K+L+ I+H LI
Sbjct: 2053 RDYRESRKILLNIEHRLI 2070


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 311 ECILSYLLSVTSKHYLH 261
           EC+LS LLSV  K  LH
Sbjct: 16  ECVLSGLLSVDGKKVLH 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,810
Number of Sequences: 5004
Number of extensions: 53878
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)