Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0452
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    29   2.3  
SB_26336| Best HMM Match : Dickkopf_N (HMM E-Value=4.2)                27   9.4  

>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 233 YVCRIIFLFYADNVSKSQIINMTECILWHTDKIQHAYVNEFN 358
           + C +  LF +D+ +   I+++    L H   +  AYV+E N
Sbjct: 843 FTCLLAVLFSSDSETSCMIVHIVHLALRHGSDLPGAYVSEMN 884


>SB_26336| Best HMM Match : Dickkopf_N (HMM E-Value=4.2)
          Length = 533

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 402 YTYHKPEVEIKCDKLLNSFT*ACCILSVCQRMHSVIFIIC--DFETLSA*NKNIIRH 238
           Y+   P+ +I C +L +S++       +C+   +V  I+C  D E+ SA  +  IRH
Sbjct: 404 YSALYPDQDIHCPRLCDSYSKVLLNGVMCRTTQTVGVIVCCPDGESRSAKVQRFIRH 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,095,186
Number of Sequences: 59808
Number of extensions: 350595
Number of successful extensions: 1427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)