Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0452
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-3|CAB60491.1|  346|Caenorhabditis elegans Hypothetical ...    30   1.2  
Y14065-2|CAA74393.1|  497|Caenorhabditis elegans catalase 1 prot...    28   4.7  
X82175-1|CAA57665.1|  500|Caenorhabditis elegans catalase protein.     28   4.7  
AL034488-15|CAA22451.1|  500|Caenorhabditis elegans Hypothetical...    28   4.7  
AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AL132859-3|CAB60491.1|  346|Caenorhabditis elegans Hypothetical
           protein Y39C12A.6 protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -2

Query: 349 IYVGMLYLICVPKNAFCHIYYL*LRNIICIK*KYYSAYINITYK*LHGVSRVLLIIIIIE 170
           +Y  +++LI +  N F  +YY      I ++ KYY   + I ++ ++       +I+IIE
Sbjct: 19  VYFLIVFLIIIILNIFSLMYYF-FNLAITVRVKYYKTNLQIIHQAIYATCPFSSVILIIE 77


>Y14065-2|CAA74393.1|  497|Caenorhabditis elegans catalase 1
           protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 57  VLFVRTPSHFPPFCGAQQCDY*TSLKLIKIINAKWLY 167
           + F+R P HFP F   Q+ +  T LK   +I   WL+
Sbjct: 148 IFFIRDPIHFPNFIHTQKRNPQTHLKDPNMIFDFWLH 184


>X82175-1|CAA57665.1|  500|Caenorhabditis elegans catalase protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 57  VLFVRTPSHFPPFCGAQQCDY*TSLKLIKIINAKWLY 167
           + F+R P HFP F   Q+ +  T LK   +I   WL+
Sbjct: 148 IFFIRDPIHFPNFIHTQKRNPQTHLKDPNMIFDFWLH 184


>AL034488-15|CAA22451.1|  500|Caenorhabditis elegans Hypothetical
           protein Y54G11A.5 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 57  VLFVRTPSHFPPFCGAQQCDY*TSLKLIKIINAKWLY 167
           + F+R P HFP F   Q+ +  T LK   +I   WL+
Sbjct: 148 IFFIRDPIHFPNFIHTQKRNPQTHLKDPNMIFDFWLH 184


>AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical
           protein Y59A8A.2 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 86  EMRRRPYKEYKKVLVKIKHELIKVVQE 6
           E+ +   KE+K++ VK++ E+ KV++E
Sbjct: 316 ELEKNEQKEHKELRVKMREEIDKVIEE 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,052,594
Number of Sequences: 27780
Number of extensions: 295973
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)