Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0452
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27630.2 68417.m03972 expressed protein                             29   3.3  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    29   3.3  
At1g64990.1 68414.m07366 expressed protein contains similarity t...    27   7.7  

>At4g27630.2 68417.m03972 expressed protein
          Length = 467

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 116 IALLGATKWWEMRRRPYKEY--KKVLVKI 36
           + LLG+   W + RR YKEY  K+ LV+I
Sbjct: 17  LCLLGSAGLWFLNRRLYKEYEEKRALVQI 45


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 251 FLFYADNVSKSQIINMTECILWHTDKIQHAYVNEFNNLSHLISTSGLWYV 400
           FL  AD    S  ++ +  +  H DK+ + + + F +L + I +SG W++
Sbjct: 204 FLVQADIFEDSNGVS-SAAVQLHLDKLDNTWTDLFPSLDYAIISSGEWFL 252


>At1g64990.1 68414.m07366 expressed protein contains similarity to
           putative G-protein coupled receptor GI:6649579 from
           [Homo sapiens]
          Length = 468

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 116 IALLGATKWWEMRRRPYKEY--KKVLVKI 36
           ++LLG    W + RR YKEY  K+ LV+I
Sbjct: 17  LSLLGWAGLWFLNRRLYKEYEEKRALVQI 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,635,889
Number of Sequences: 28952
Number of extensions: 248478
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)