Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0450
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   5.5  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   7.2  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   7.2  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 80  MDPVTRRRFLKH 45
           +DPV +RR L+H
Sbjct: 127 LDPVVKRRLLQH 138


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 665 GASAASGVLISGTAAASLSTLGAKSIFFTMLGMM 564
           G    SG  +   A   L  L A  +FF + G+M
Sbjct: 64  GTFLISGFQMQKIATKGLDLLEANRLFFFLTGVM 97


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 665 GASAASGVLISGTAAASLSTLGAKSIFFTMLGMM 564
           G    SG  +   A   L  L A  +FF + G+M
Sbjct: 64  GTFLISGFQMQKIATKGLDLLEANRLFFFLTGVM 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.130    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,820
Number of Sequences: 336
Number of extensions: 1880
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)