Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0450
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.14
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 32 0.41
At3g49990.1 68416.m05466 expressed protein 31 0.55
At1g12080.2 68414.m01397 expressed protein 31 0.73
At5g63550.1 68418.m07976 expressed protein 31 0.96
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 31 0.96
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 31 0.96
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /... 31 0.96
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 30 1.3
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 29 2.2
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 29 2.2
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor... 27 2.6
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 29 2.9
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 29 2.9
At1g12080.1 68414.m01396 expressed protein 29 2.9
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 3.9
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 3.9
At1g34590.1 68414.m04299 hypothetical protein 29 3.9
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 28 5.1
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 5.1
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 28 6.8
At4g31880.1 68417.m04531 expressed protein 27 8.9
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ... 27 8.9
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 409 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 561
P A AK+ +K ++ ++ +DS +E + +K KP+A D+ S D +
Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDS 191
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +1
Query: 301 AKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAAQPEDSKT 480
+ DD + EDS+ + S D++ +S D E+PA + D+K
Sbjct: 185 SSSDDDSDEDSEDEKPATKKAAPAAAKAASSSDSSDEDSDEESED---EKPAQKKADTKA 241
Query: 481 EVQATVAEISKEEKPSATDAE 543
+++ E S+ E+ + D E
Sbjct: 242 SKKSSSDESSESEEDESEDEE 262
>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 342
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -2
Query: 215 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 111
+T+SS+ AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 406 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 543
+P A+ D+K E P A+P KT Q + E K+E+ +A AE
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE 465
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 31.1 bits (67), Expect = 0.73
Identities = 22/88 (25%), Positives = 43/88 (48%)
Frame = +1
Query: 397 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 576
+ E+ EA+ D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 57 NEEVVVEEAEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVEE 111
Query: 577 MVKKIDLAPNVESDAAAVPEIKTPEAAD 660
KK ++ +++ AA E+ +A +
Sbjct: 112 -EKKTEVVEEKQTEVAAAEEVAVEKAEE 138
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 403 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 582
E D + + +++VE+P+ + SK V+ + K+++PS A+GSA S +
Sbjct: 320 EKTDTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPS---AKGSARSGEKSSKQI 376
Query: 583 KKIDLAP 603
K +P
Sbjct: 377 AKSTSSP 383
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 30.7 bits (66), Expect = 0.96
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 403 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 582
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 583 KKIDLAPNVESDAAAVPE--IKTPE 651
+++ + A AV E +K PE
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPE 212
>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 30.7 bits (66), Expect = 0.96
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 403 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 582
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 583 KKIDLAPNVESDAAAVPE--IKTPE 651
+++ + A AV E +K PE
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPE 212
>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
SEC14-like protein 2 (Alpha-tocopherol associated
protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
taurus}; similar to GI:807956 from [Saccharomyces
cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 573
Score = 30.7 bits (66), Expect = 0.96
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 418 EAKSADIKVEE--PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKI 591
E + ++KVEE PA + + +A E EEKP AE + + A+
Sbjct: 145 EETTTEVKVEEEKPAVPAAEEEKSSEAAPVETKSEEKPE-EKAEVTTEKASSAEE----- 198
Query: 592 DLAPNVESDAAAVPEIKTPEAADAP 666
D VE+ ++ + PE+A AP
Sbjct: 199 DGTKTVEAIEESIVSVSPPESAVAP 223
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 409 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA 531
P E K + K EE + E+ KTE ++ AE +EEK +A
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAA 163
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 409 PDAEAKSADIKVEEPAAQP-EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVK 585
P+AEA +VEE P E + EV ++ EE+ AT AE D + +
Sbjct: 373 PEAEASVTSAEVEESVCVPAEVTSEEVPSSETPKVVEEEVIATKAE---DDSPEKEEQTE 429
Query: 586 KIDLAPNVESDAAAVPEIKTPE 651
+ A E +PE K+ E
Sbjct: 430 TLAAAAEAEEVVPPIPETKSEE 451
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 280 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 456
E P + E KKD+ AP ++ + K E+ + + + A + V EE
Sbjct: 73 ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129
Query: 457 AQPEDSKTEVQATV-AEISKEEK 522
+ E+ K V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152
>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
(CPK2) identical to calcium-dependent protein kinase
isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 646
Score = 27.1 bits (57), Expect(2) = 2.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 403 EIPDAEAKSADIKVEEPAAQPED-SKTEVQATVAEISKEEKPSATDAE 543
E+P E+K ++ V+ +A+PE S+++ + T E + E KP T AE
Sbjct: 109 EVPPEESKR-EVVVQPESAKPETKSESKPETTKPETTSETKPE-TKAE 154
Score = 20.6 bits (41), Expect(2) = 2.6
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +1
Query: 292 IPEAKKDDIAPEDS 333
+PE K ++ PE+S
Sbjct: 102 VPEESKQEVPPEES 115
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 439 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPNV 609
K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V
Sbjct: 344 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 403
Query: 610 ESDAAAVPEIKTP 648
+ +A KTP
Sbjct: 404 TQEDSAFNTEKTP 416
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 439 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPNV 609
K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V
Sbjct: 605 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 664
Query: 610 ESDAAAVPEIKTP 648
+ +A KTP
Sbjct: 665 TQEDSAFNTEKTP 677
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +1
Query: 394 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 573
K+ E E + D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 22 KTVEETVVETEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVE 76
Query: 574 NMVKKIDLAPNVESDAAAVPEIKTPEAAD 660
KK ++ +++ AA E+ +A +
Sbjct: 77 E-EKKTEVVEEKQTEVAAAEEVAVEKAEE 104
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 277 DEVPAIPEAKKDDIAPE 327
D+ +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +1
Query: 391 AKSSEIPDAEAKSADIKVEEPAAQPED-------SKTEVQATVAEISKEEKPSATDAEGS 549
A E P AE ++ VEE AAQPE + E + A K++K + E
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKK 367
Query: 550 ADSAAIIPNMVK 585
A +AA + V+
Sbjct: 368 AAAAAAATSSVE 379
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 28.7 bits (61), Expect = 3.9
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +1
Query: 406 IPDAEAKSADIKVEEPAAQPEDSKT-EVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 582
IPDA A D + P A PE S+ V A S DA ++ +IP+
Sbjct: 436 IPDAAAP-VDAGLISPRAAPEASRDGNVIPDAAAPVDAGLISLRDAPEASRDGNVIPDAA 494
Query: 583 KKIDLAPNVESDAAAVPEIKTPEAADAP*VS 675
+D AP+ +A P + EA A VS
Sbjct: 495 APVDAAPSEAQEAE--PSVAASEAVVALPVS 523
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 28.3 bits (60), Expect = 5.1
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Frame = +1
Query: 391 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQ------ATVAEISKEEKPSATDAEGSA 552
A SS+ E K K EE ++Q E + E + ++ E SKEE+P + E S+
Sbjct: 322 ASSSQDESKEEKPERKKKEESSSQGEGKEEEPEKREKEDSSSQEESKEEEPENKEKEASS 381
Query: 553 DSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPE 651
N +K+ ++ ES + E K E
Sbjct: 382 SQE---ENEIKETEIKEKEESSSQEGNENKETE 411
>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 793
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 413 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 526
M K+N+ + K+K ++L LK K YK + K Q + L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 412 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 561
+AE K ++KVE + +D + AT+ E EEK +A +A+ +A
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKKDHQAA 459
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = +1
Query: 394 KSSEIPDAEAK-SADIKVEEPAAQPEDSKTEVQATVAE---ISKEEKPSATDAEGSADSA 561
K E E K SA I EE + +P S+ +V + S + KP+ ++ S
Sbjct: 456 KKKESSTEEVKPSASIATEEVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSET 515
Query: 562 AIIPNMVKKIDLAPNVESDAAAVPEIKTP 648
+ KK+ + N + E K P
Sbjct: 516 KVAKQSEKKVVGSDNAQESTKPKEEKKKP 544
>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 586
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 379 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 293
FL F E PV ++ L L RP WPL+
Sbjct: 25 FLSFPRPENTPVQLFQLLHTLERPGWPLL 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.130 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,169,616
Number of Sequences: 28952
Number of extensions: 179405
Number of successful extensions: 593
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -