Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0449
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    29   2.5  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    28   7.7  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    28   7.7  

>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 467 FFFLLVGITLDRVVVVITSGISGNL 393
           FFF  VGI L+ +++V  S I GN+
Sbjct: 51  FFFFFVGIFLNTILIVSNSAIFGNI 75


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 557 CKLRYFQCLFIKRYHLIIQNCV 492
           CK R   C+ +K YHL  + C+
Sbjct: 785 CKTRPKDCIMLKCYHLFCETCI 806


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 557 CKLRYFQCLFIKRYHLIIQNCV 492
           CK R   C+ +K YHL  + C+
Sbjct: 788 CKTRPKDCIMLKCYHLFCETCI 809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,816,446
Number of Sequences: 27780
Number of extensions: 277353
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)