Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0448
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   5.1  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   5.1  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   9.0  

>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 211 RRQRCGHRERCELSKKRPKTQLD*WF*LPQQEPR*RGCKPREQLRGDHQRGLRLQRTEQR 32
           RRQ  GH +  +L  ++   QL     L Q  P     +PR QL    Q  L ++  + +
Sbjct: 68  RRQLQGHAQSGQLPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQEQTMLLVRHRQLQ 127

Query: 31  SA 26
           +A
Sbjct: 128 TA 129


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 495 DVLRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCV 599
           ++L +CCC   R   +    CGC ++  +CS  C+
Sbjct: 215 NLLFSCCC--ARVSWAWSTVCGCYKNTYTCSQTCL 247


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 403 LWTSKKILRKQLEKWSWSQP 344
           LWT +KI+    E +SW  P
Sbjct: 102 LWTDEKIMSFMNENYSWFMP 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,131
Number of Sequences: 5004
Number of extensions: 27735
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)