Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0448
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical...    30   1.6  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   6.3  
AL132860-29|CAB60505.2|  386|Caenorhabditis elegans Hypothetical...    27   8.3  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical
           protein Y46G5A.20 protein.
          Length = 109

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 141 DGFSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQLG 22
           D F  H+  R S + S  SSS  T+S+  + S++S+DQ+G
Sbjct: 28  DSFPRHAPRRRSSS-SSSSSSSSTSSSSSSNSSESDDQVG 66


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 438 CSRCSSHRRILRPRYTRSCDVLRACCC*GDRSRCSLRCTCGC 563
           C RC +  R      TR C   R CCC      C   C CGC
Sbjct: 97  CRRCCTCCRTCC--CTRCCTCCRPCCC-----GCGCGCGCGC 131


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 483 TRSCDVLRACCC*GDRSRCSLRCTCGC 563
           TR C   R CCC      C   C CGC
Sbjct: 92  TRCCTCCRPCCC-----GCGCGCGCGC 113


>AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical
           protein F55A3.2 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 288 YWPSIFVRRCTIVRLCRISGCDQDHFSSCFLSIFLLVHNRSWITIFR 428
           YW SIF+R C I  LC+ +      +S  F       H +  IT F+
Sbjct: 589 YWLSIFLRSCGIDWLCKSNNICSAAWSLVFRDSNKTSHQQYAITYFK 635


>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
           protein W09G3.6 protein.
          Length = 1125

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 286 HMSMLVQQHKRRQEQQWS**RLEQHRRQRCGH 191
           +M M+ ++ +R+Q++ W   RL QH ++   H
Sbjct: 685 NMGMISEEMRRKQDEMWLDLRLTQHIKKHSSH 716


>Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.4 protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 291 WPSIFVRRC-TIVRLCRISGCDQDHFSSCF--LSIFLLVHNRSWITIFRNILCSRCSSHR 461
           W ++  + C +    C   GC  D  + C   LSI L V  + ++  +    C RCS+  
Sbjct: 115 WRTVIAQDCPSACGFCNEGGC-VDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAAT 173

Query: 462 RILRPRYTRSCDV 500
            +  P  T +C V
Sbjct: 174 TV-APPVTNNCTV 185


>Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.1 protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 291 WPSIFVRRC-TIVRLCRISGCDQDHFSSCF--LSIFLLVHNRSWITIFRNILCSRCSSHR 461
           W ++  + C +    C   GC  D  + C   LSI L V  + ++  +    C RCS+  
Sbjct: 115 WRTVIAQDCPSACGFCNEGGC-VDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAAT 173

Query: 462 RILRPRYTRSCDV 500
            +  P  T +C V
Sbjct: 174 TV-APPVTNNCTV 185


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +3

Query: 333 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 500
           C IS G   + + SC    LS    +  R W TIFR+I   R +   ++L  RYT   D 
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246

Query: 501 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 608
                C   R++ S   TC  L++ Q      ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +3

Query: 333 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 500
           C IS G   + + SC    LS    +  R W TIFR+I   R +   ++L  RYT   D 
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246

Query: 501 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 608
                C   R++ S   TC  L++ Q      ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +3

Query: 333 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 500
           C IS G   + + SC    LS    +  R W TIFR+I   R +   ++L  RYT   D 
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246

Query: 501 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 608
                C   R++ S   TC  L++ Q      ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +3

Query: 333 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 500
           C IS G   + + SC    LS    +  R W TIFR+I   R +   ++L  RYT   D 
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246

Query: 501 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 608
                C   R++ S   TC  L++ Q      ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 223 LEQHRRQRCGHRERCELSKKRP 158
           +E HRR+RC  ++RC  + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341


>AL132860-29|CAB60505.2|  386|Caenorhabditis elegans Hypothetical
           protein Y56A3A.28 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 405 RSWITIFRNILCSRCSSHRRILRPRYTRSCDVL 503
           RSW +I R+ LC  C  + R  R  Y  + D L
Sbjct: 10  RSWTSISRHFLCLECRKYFRNKREFYWHTEDCL 42


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 505 RSTSQLRV*RGRS-MRRWLEHREQSMLRKMVIHERLWTSKKILR 377
           R+   LR  R R  +  WLE  E+  +R +VIHE    +++IL+
Sbjct: 459 RTEKLLRSQRRRDWVGSWLEGLEREKIRFVVIHESYTQARRILK 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,067,983
Number of Sequences: 27780
Number of extensions: 183757
Number of successful extensions: 752
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)