Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0445
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.23 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.8  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   3.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 10  TGRVCECVARVPHAYRLRIKKKTILV 87
           T +VC    R+PH YR R + + I V
Sbjct: 225 TRKVCGVWKRIPHDYRKRFRMEKIYV 250


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 372 RVDVILDIFLSYPPQVSLDNH 310
           R  VI   FL+ P +VS+DNH
Sbjct: 281 RFRVINAGFLNCPIEVSIDNH 301



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 575 VPIGTAPKIVAKDKSYDF 628
           +P+GT  ++V  DK Y +
Sbjct: 511 IPLGTVVEMVLIDKGYAY 528


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 529 HPAQNPSKRTDQQ 567
           HP Q+P+++ DQQ
Sbjct: 103 HPGQSPAEKYDQQ 115


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 459 KPAGYPISALGTYEIPVAML 400
           K A YP+  LG + +PV  L
Sbjct: 35  KSAPYPVPGLGLHGLPVDSL 54


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 422 YVPKADIGYP-AGLLPECPGVQKNATISARMLP 517
           Y P  + G P AG+  + PG+  N  ++   LP
Sbjct: 176 YHPYPNFGVPPAGIPLQNPGLNLNPPVTQTQLP 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,099
Number of Sequences: 336
Number of extensions: 2737
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)